Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L09
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 422 e-118
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 418 e-117
SB_56| Best HMM Match : Actin (HMM E-Value=0) 418 e-117
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 417 e-117
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 345 3e-95
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 224 6e-59
SB_54| Best HMM Match : Actin (HMM E-Value=0) 186 1e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 2e-44
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 162 3e-40
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 157 8e-39
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 105 3e-23
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 59 4e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 58 7e-09
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 58 9e-09
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 56 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 3e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.003
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 30 1.6
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 2.1
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 29 3.6
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 3.6
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.8
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 8.3
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 422 bits (1039), Expect = e-118
Identities = 196/204 (96%), Positives = 200/204 (98%)
Frame = +2
Query: 80 LCXXSVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 259
+C VAALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 260 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 439
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 440 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 619
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLD
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 620 LAGRDLTDYLMKILTERGYSFTTT 691
LAGRDLTDYLMKILTERGYSFTTT
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTT 204
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 418 bits (1030), Expect = e-117
Identities = 195/199 (97%), Positives = 198/199 (99%)
Frame = +2
Query: 95 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 274
VAALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 5 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 275 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 454
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 455 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 634
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 635 LTDYLMKILTERGYSFTTT 691
LTDYLMKILTERGYSFTTT
Sbjct: 185 LTDYLMKILTERGYSFTTT 203
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 418 bits (1030), Expect = e-117
Identities = 195/199 (97%), Positives = 198/199 (99%)
Frame = +2
Query: 95 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 274
VAALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 5 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 275 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 454
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 455 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 634
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 635 LTDYLMKILTERGYSFTTT 691
LTDYLMKILTERGYSFTTT
Sbjct: 185 LTDYLMKILTERGYSFTTT 203
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 417 bits (1027), Expect = e-117
Identities = 193/199 (96%), Positives = 198/199 (99%)
Frame = +2
Query: 95 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 274
+AALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 IAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 275 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 454
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 455 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 634
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRD 185
Query: 635 LTDYLMKILTERGYSFTTT 691
LTDYLMKILTERGYSFTTT
Sbjct: 186 LTDYLMKILTERGYSFTTT 204
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 345 bits (847), Expect = 3e-95
Identities = 160/168 (95%), Positives = 165/168 (98%), Gaps = 2/168 (1%)
Frame = +2
Query: 95 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 274
+AALV+DNGSGMCKAGFAG DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 IAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 275 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 454
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 455 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE--GYA 592
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE GY+
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 224 bits (547), Expect = 6e-59
Identities = 102/201 (50%), Positives = 141/201 (70%), Gaps = 3/201 (1%)
Frame = +2
Query: 98 AALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 271
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 272 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 448
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 449 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 628
MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AG
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAG 186
Query: 629 RDLTDYLMKILTERGYSFTTT 691
RD+T YL+K++ RGY+F T
Sbjct: 187 RDITKYLIKLMLLRGYAFNHT 207
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 186 bits (454), Expect = 1e-47
Identities = 84/120 (70%), Positives = 101/120 (84%)
Frame = +2
Query: 332 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 511
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 512 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 691
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +2
Query: 29 AVSSIPASPTQTHTKFNLCXXSVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQ 205
AV+ AS T+ F +V +V+DNGSG CKAG + ++PR VFP+IVGRPRH+
Sbjct: 2074 AVAMNIASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 175 bits (427), Expect = 2e-44
Identities = 80/86 (93%), Positives = 82/86 (95%)
Frame = +2
Query: 95 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 274
VAALV+DNGSGMCKAGFAG DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 5 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 64
Query: 275 LTLKYPIEHGIITNWDDMEKIWHHTF 352
LTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 172 bits (418), Expect = 3e-43
Identities = 81/89 (91%), Positives = 86/89 (96%)
Frame = +2
Query: 425 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 604
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 605 ILRLDLAGRDLTDYLMKILTERGYSFTTT 691
I+RLDLAGRDLTDYLMKILTERGYSFTTT
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTT 166
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 162 bits (393), Expect = 3e-40
Identities = 75/82 (91%), Positives = 79/82 (96%)
Frame = +2
Query: 446 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 625
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 626 GRDLTDYLMKILTERGYSFTTT 691
GRDLTDYLMK++TERGYSFTTT
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTT 82
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 157 bits (381), Expect = 8e-39
Identities = 66/101 (65%), Positives = 89/101 (88%)
Frame = +2
Query: 380 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 559
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 560 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 682
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCF 226
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 105 bits (253), Expect = 3e-23
Identities = 48/126 (38%), Positives = 80/126 (63%)
Frame = +2
Query: 290 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 469
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 470 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 649
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 650 MKILTE 667
++ E
Sbjct: 123 RQMFEE 128
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 8/70 (11%)
Frame = +2
Query: 485 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 640
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 641 DYLMKILTER 670
++ ++L ER
Sbjct: 100 FFVQQLLRER 109
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 491 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TE 667
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 668 RGYSFTTT 691
RG++FT++
Sbjct: 827 RGHNFTSS 834
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Frame = +2
Query: 8 PMTRSLAAVSSIPASPTQTHTKFNLCXXSVAALVVDNGSGMCKAGFAGXDAPRAVFPSIV 187
P+T A + IP + + ++ F L A+V+DNG G+ K GFAG PR + P++V
Sbjct: 672 PITLCTAFATVIPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
Query: 188 GRPRHQGVMVG--MGQKD-SYVGDEAQSKRGILTL 283
G P+ +++G + KD GD A +K G++ L
Sbjct: 731 GNPQRFSMLIGDNVNVKDYKKYGDAAVAKSGVMHL 765
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 57.6 bits (133), Expect = 9e-09
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Frame = +2
Query: 95 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 274
+A LV+D G+ K GFA APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 275 LTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 448
L Y P + G + NWD ++IW +TF E + M +I
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEI 324
Query: 449 MFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 610
+FE +N A+ A LS Y S +V+D+G +H VP++ G + A+
Sbjct: 325 LFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAVR 384
Query: 611 R 613
R
Sbjct: 385 R 385
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +2
Query: 104 LVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQ 205
LV+D GS M K GFAG DAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 218 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 397
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 527 TGIVLDSGDGVSHTVPI 577
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = -3
Query: 202 VARATHDGREDGAGRVXAGETGLAHAGAIVD 110
+AR+ DG E+G+G + +GETGLAH GAI+D
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIID 31
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 335 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 514
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 515 SGRTTGIV 538
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 281 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 433
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 207 PWWRGRPTMDGKTARGASXPAKPALHMPEPLSTTSAA 97
P W + G T R PAKP+L++P P S T ++
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSPPSKTPSS 566
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 422 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 538
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 667 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 524
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 201 WRGRPTMDGKTARGASXPAKPALHMPEPLSTTSAA 97
W + G T R PAKPAL++P P S T ++
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSPPSKTPSS 106
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 442 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 263
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 262 AL 257
++
Sbjct: 214 SV 215
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 177 GKTARGASXPAKPALHMPEPLSTTSAA 97
G T R PAKPAL++P P S T ++
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKTPSS 106
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -1
Query: 627 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 448
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 447 IWVIFSLLALGLR 409
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 658 DLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEHDTGGTTGGVQ 506
D H++ + +TS V+ + G + D + T S E +T GTTGG Q
Sbjct: 149 DKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEANTAGTTGGTQ 203
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = -1
Query: 567 VWE--TPSPESSTIPVVRPE-------AYSESTAWMATYMAGELKVSNMIWVIFSLLALG 415
VWE T P + T+P + + Y S +W+ L N ++++F +LG
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDI-VLLAPNAMFMVFLFYSLG 61
Query: 414 LRGASVSSTGCSSGATRSSL*KVWCQIFSMSSQLVMIPCSMGYFRVRIPLLLWAS 250
L A + T C T +L ++ ++++SQ+ + C + R +LL AS
Sbjct: 62 LAHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 610 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 512
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 425 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 574
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 410 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 538
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 576 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 400
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 399 VSSTGCSSGATRSSL*KVW 343
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,840
Number of Sequences: 59808
Number of extensions: 438452
Number of successful extensions: 1514
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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