Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L08
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    38   6e-05
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.9  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   7.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +1

Query: 535 ENDWTVPLPRDERQELLLFGTGNTGINFSKYEDIPVEAXGDRVPXCITSFEDVNLTXLMR 714
           + ++ +P P  E  E L      TG+NF K ++I V+  G+  P  ITSFE   L   + 
Sbjct: 112 KREFYIP-PEVENVEDLFTSGITTGVNFMKLDEIEVKVTGNDAPPPITSFETSGLRPHLL 170

Query: 715 TNISLARY 738
            N+  + Y
Sbjct: 171 ENVKKSGY 178


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -1

Query: 393 RPASVPFAFTIIPFLGFIPTLWFAI 319
           RP+S+ F   I+    ++P + + +
Sbjct: 313 RPSSLRFCLNILSIFTYVPMILYCV 337


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = -1

Query: 393 RPASVPFAFTIIPFLGFIPTLWFAI 319
           RP+S+ F   I+    ++P + + +
Sbjct: 38  RPSSLRFCLNILSIFTYVPMILYCV 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,652
Number of Sequences: 336
Number of extensions: 3103
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)