Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L08
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    38   0.002
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    29   0.92 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   1.2  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   3.7  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   4.9  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   4.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.5  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +1

Query: 601 NTGINFSKYEDIPVEAXGDRVPXCITSFEDVNLTXLMRTNISLARY 738
           +TGINF KY+DIPVE  G  +   +  F    L   +  NI L+ Y
Sbjct: 145 STGINFEKYDDIPVEVSGGDIEP-VNEFTSPPLNSHLLQNIKLSGY 189


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +1

Query: 421 EPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFGTG 600
           EP    +D+  E +   E+   +    ++   ++    +ND T+P P     E +   T 
Sbjct: 142 EPVVDEDDKLSEEDLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTS 201

Query: 601 --NTGINFSKYED-IPVEAXGDRVPXCITSFEDVN 696
             N  I  S+Y D + +E   D+    IT+FE  N
Sbjct: 202 VENAYITNSQYNDTLDME---DQTSDLITTFEHEN 233


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 430 APRNDRWKEPEPRAEERSNSRWPSDDVR 513
           APR  R+   E   +ERS SR P+ D R
Sbjct: 39  APRESRYYRKEEHLQERSRSRSPARDSR 66


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 332 SVGMNPRNGMIVNANGTDAGLATCDVRRIMNHRHH 436
           SV  NP N  I+    TD  +A  D+R  +N R H
Sbjct: 286 SVAFNPHNDFILATCSTDKTIALWDLRN-LNQRLH 319


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 573 TGTIAVRHWQHRDQFLQI 626
           TG I VRHW+H D   ++
Sbjct: 104 TGMIEVRHWEHIDALSEL 121


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 506 MCAELDLAKTRMIGQYRYLAMNDRNYCCSALATPGSISPNTRI 634
           M AE+D A+    GQ+R L   +    CS L     +  ++RI
Sbjct: 859 MVAEVDRAEALKSGQFRPLVRKEIEEHCSLLGLDAELVSHSRI 901


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 180  ILVGNITHITTKRYVFLGTLLQKDLKHRXQ*ILH 79
            +L   IT  T + Y+F+G +  + LKH     +H
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMH 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,033
Number of Sequences: 5004
Number of extensions: 54603
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)