Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L08
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 53 3e-07
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 48 6e-06
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 48 8e-06
06_01_0169 - 1346281-1349188,1350069-1350184 32 0.55
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 31 0.73
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 31 0.73
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 31 0.96
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 31 1.3
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 30 1.7
01_06_0766 - 31820168-31820509,31821898-31822110,31822330-318224... 30 1.7
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 30 1.7
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 2.2
11_04_0239 + 15235280-15235375,15236054-15236218 29 5.1
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 29 5.1
11_04_0254 - 15377689-15378357,15378807-15379241,15380326-153803... 28 6.8
06_03_0411 - 20520823-20521674 28 6.8
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 28 9.0
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 28 9.0
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1
Query: 589 FGTGNTGINFSKYEDIPVEAXGDRVPXCITSFEDVNLTXLMRTNISLARY 738
F T NTGINF YEDIPVE G VP + +F +++L + NI +Y
Sbjct: 208 FDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEIDLGDALNENIRRCKY 257
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 601 NTGINFSKYEDIPVEAXGDRVPXCITSFEDVNLTXLMRTNISLARY 738
NTGINF YEDIPVE G VP + +F +++L + NI +Y
Sbjct: 130 NTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKY 175
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 48.0 bits (109), Expect = 8e-06
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = +1
Query: 553 PLPRDERQELLLFGTGNTGINFSKYEDIPVEAXGDRVPXCITSFEDVNLTXLMRTNISLA 732
P E E+ G NTGINF YEDIPVE G VP +F +++L + NI
Sbjct: 283 PFANSEAAEVDFEGE-NTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNENIRRC 341
Query: 733 RY 738
+Y
Sbjct: 342 KY 343
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 670 SXVRGLRWPQPVYPRIWRN*SRCCQCRTAIVPVVHRE 560
S +RG+R+ + P + R CCQ R+ IV + H E
Sbjct: 894 SELRGIRFEKDALPHMERMEIECCQLRSGIVGIKHLE 930
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 430 APRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLL 588
AP D W EP+P EE+ DD R R + + L R E ++LLL
Sbjct: 73 APAVDDWHEPDPIEEEQDED---DDDDAREERRARIRERALLLRRHEEEQLLL 122
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 424 PPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDW 546
PPA RN++ + P A+ S R D V + R KD +D+
Sbjct: 362 PPASRNEKRDKAHPHADRESVDRPDLDHVIQRRRPKDRHDY 402
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 31.1 bits (67), Expect = 0.96
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 407 VRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 565
V+ N R G K+R KS+ L + LD+ TRM+GQY +LA
Sbjct: 376 VKNSYNRRAPGTVITKTRDLS-KSILTSIVLKSNITMLDIVSTRMLGQYGFLA 427
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 407 VRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 565
V+ N R G K+R K+V L + LD+ TRM+GQY +LA
Sbjct: 262 VKNSYNRRAPGTLITKARDMS-KTVLTSIVLKSNITMLDIVSTRMLGQYGFLA 313
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 314 LRMANQSVGMNPRNGMIVNANGTDAGLATCDVRRIMNHRH-HGMTAGKSRSQELKSVPIH 490
++M +V N + M ++ANGTD G A +HRH HG + S S+ P+
Sbjct: 545 IQMTRSAVSQNGES-MSLHANGTDHGCAD-PQGNSKSHRHSHGSSQCCSHSKRPDKTPLG 602
Query: 491 AGL 499
GL
Sbjct: 603 LGL 605
>01_06_0766 -
31820168-31820509,31821898-31822110,31822330-31822473,
31822759-31822797,31822834-31822932,31823024-31823113
Length = 308
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 691 HPQNW*CSXVRGLRWPQPVYPRIWRN*SR 605
HP + V G R P+P YPR+W+ R
Sbjct: 22 HPSKFSTLVVCGARGPRPRYPRVWKTRKR 50
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Frame = +1
Query: 424 PPAPRN---DRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFG 594
PP PR+ DR ++ R+ R+ R D R R R+ ++ + P
Sbjct: 64 PPPPRSGRGDRDRDRRDRSRSRTPPRRDHRDRDRDRDRRHDDHRSAPSHHHPLPAAAAIA 123
Query: 595 TGNTGINFSKYEDIPVEAXGDRVPXCITSFE 687
+ ++ + GD VP ITSFE
Sbjct: 124 ADDPSTEAYRHRH-EITVVGDNVPAPITSFE 153
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/104 (22%), Positives = 39/104 (37%)
Frame = +1
Query: 271 RQLQATSDQGRDSGSQNGEPERWNESEKWNXXXXXXXXXXXXXXXXXXXYEPPAPRNDRW 450
+Q A SD G + G EPE +ES+ + P P+
Sbjct: 46 QQAAAPSDDGEEGGDDEAEPE--DESDADFVGDEEEEEEDLEDEDDLEEVKAPRPKRPPK 103
Query: 451 KEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQEL 582
+P PR+ R R DD +++ D+ + D+ +E+
Sbjct: 104 GKPPPRSRRR---RQKDDDDDYEEEEEEDADFDPDVDEDDEEEV 144
>11_04_0239 + 15235280-15235375,15236054-15236218
Length = 86
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -3
Query: 364 DHSISRIHSNA-LVRHSEIHCLDLDQRLPATAY---ADAGVCSDQYS*EPGAASPDQQAA 197
+H++ R+ V H E C++ + R+PA Y ADAGV D A PD
Sbjct: 22 EHALPRVLGRKDNVFHHECTCIE-NIRMPAVPYIEDADAGVLQDHVEDHDDALPPDLSGQ 80
Query: 196 ALD 188
+D
Sbjct: 81 IVD 83
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 424 PPAPRNDRWKEPEPRAEERSNSRWPSDDVR 513
PP R + P PR RS SR DD+R
Sbjct: 50 PPPRRRSTSRSPRPRRHGRSRSRSRDDDLR 79
>11_04_0254 -
15377689-15378357,15378807-15379241,15380326-15380370,
15380675-15381145
Length = 539
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 465 WLRLFPAVIPWCRWFIILLTSHVARPASVPFAFTIIPFLGFI 340
WL L P ++ + + LLT+ AR +P + +PF+G +
Sbjct: 8 WLLLSPLILLLLHYALALLTARRARKNPLPPSPPALPFIGHL 49
>06_03_0411 - 20520823-20521674
Length = 283
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 424 PPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDE 537
PP +E E EER R P +R R+R DE
Sbjct: 48 PPVASQREEEEEEEEEEEREVKRSPPGTLRHRRTRSDE 85
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 447 AVIPWCRWFIILLTSHVARPASVPFAFTIIPFL 349
A +P W LL A AS+P AF ++PFL
Sbjct: 72 AAVPAREWHA-LLRELAATDASLPLAFALLPFL 103
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 424 PPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPR 564
PP P + W +P R S W S+ + S ++ W VPL R
Sbjct: 323 PPIPSLNDWSQPPARGSTFYPSIWQSEADPKANS---DSRWRVPLCR 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,206,564
Number of Sequences: 37544
Number of extensions: 409132
Number of successful extensions: 1183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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