Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L08
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       49   4e-08
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.56 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.56 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 466 RAEERSNSRWPSDDVRRTRSRKDENDWTVP-LPRDERQELLLFGTG-NTGINFSKYEDIP 639
           R + R  +    +D     ++K +  +  P LP DE+    LF  G   GINF KY++I 
Sbjct: 127 RNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDEKS---LFENGVEIGINFDKYDNIQ 183

Query: 640 VEAXGDRVPXCITSFEDVNLTXLMRTNISLARY 738
           V   GD VP  I SFE   L  ++  NI  + Y
Sbjct: 184 VNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGY 216


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 471 SSWLRLFPAVIPWCRWFIILLTSHVARPASVP 376
           S+W R F A+I W  +FI++ T  +     VP
Sbjct: 399 SAW-RHFAAIIEWLSFFIVIFTYIIILITLVP 429


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 92  NEFCTNTNAQNHKKDXIAHDEMIACIGRP 6
           N  CT+T     K+  +AH+++++ +  P
Sbjct: 631 NSMCTSTTTSPDKEHVLAHNDLMSPLDEP 659


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 595  TGNTGINFSKYEDIPVEAXGDRVPXCITSF 684
            TG+T +   +   +  +   +RVP  ITSF
Sbjct: 1290 TGSTRVGEGQSSKVAAQVPTNRVPARITSF 1319


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 595  TGNTGINFSKYEDIPVEAXGDRVPXCITSF 684
            TG+T +   +   +  +   +RVP  ITSF
Sbjct: 1286 TGSTRVGEGQSSKVAAQVPTNRVPARITSF 1315


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 691 HPQNW*CSXVRGLRWPQPVYPRIWR 617
           H   W  S   G+R  +  Y R+WR
Sbjct: 65  HHLKWNASEFAGIRVIRVPYNRVWR 89


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 554 RYLAMNDRNYCCSALATPGSIS 619
           R++ M+   +CC  L  PGS S
Sbjct: 5   RHVVMSCCCWCCDNLGGPGSSS 26


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -1

Query: 444 VIPWCRWFIILLTSHVARPASVPFAFTIIPFLGFIPTLWFAILRSTVSTLIR 289
           +I W  +F + + +   +      AF ++ +LG+  + +  I+ S  +T  R
Sbjct: 282 LICWVPFFCVNIVTSYCKTCISGRAFQVLTWLGYSNSAFNPIIYSIFNTEFR 333


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 595  TGNTGINFSKYEDIPVEAXGDRVPXCITSFED 690
            T +T I   +   I   A   RVP  I SF+D
Sbjct: 1253 TASTNIGEGEASKIVALAPSVRVPAKIASFDD 1284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,467
Number of Sequences: 438
Number of extensions: 4575
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)