Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L05
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   1.5  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   4.5  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    24   6.0  

>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 69  VNMDSPEESGECRLTKEGRTGPGGKPSSQKSP 164
           VN+  P ES +   T++   GP  KP +  +P
Sbjct: 169 VNIKYPMESSDSSSTEQQLVGPSSKPFASTTP 200


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 69  VNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHR 170
           +N+DSP E    RL +  R GP  K     S  R
Sbjct: 234 LNLDSPAELKHRRLVRSQRNGPLDKDLKPNSKIR 267


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 191 RPLSHYCPMRGLLA 150
           RP+S+YCP   L+A
Sbjct: 139 RPMSNYCPKSSLMA 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,595
Number of Sequences: 5004
Number of extensions: 15125
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)