Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L05
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    31   0.26 
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913...    30   0.45 
06_03_0752 - 24171847-24174321                                         28   2.4  
02_03_0203 + 16365262-16365644,16365774-16365869,16365991-163662...    28   2.4  
07_03_1354 - 25972597-25973787,25974381-25974680                       27   4.2  
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78...    27   5.6  
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    27   5.6  
10_05_0086 + 9025410-9025730,9025974-9026008,9026194-9026279,902...    26   9.8  

>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 142 FPPGPVRPSLVNLHSPDSSGESILTPGLVRTSSQHGPLSASEXRP 8
           FPP P    ++ L   D     +L+PG V  SS H   +A    P
Sbjct: 632 FPPAPTEQDVIVLSDSDDDNVMVLSPGDVNFSSAHDNGNAFPPNP 676


>10_08_0198 +
           15688142-15690427,15690524-15690607,15691232-15691336,
           15691420-15691528,15693037-15693188,15693278-15693583
          Length = 1013

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 157 FWLLGFPPGPVRPSLVNL-HSPDSSGESILTP 65
           F  LG PPGP++P   N+ HSP   G  +  P
Sbjct: 520 FGPLGLPPGPMQPIGPNMSHSPGPLGPGVFIP 551


>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 1   WFEVGXHWR*VAHVDWTSALSLVLIWTP 84
           WF    HW+ VA       L L+L+W P
Sbjct: 638 WFADVCHWKNVATTALVHVLLLILVWYP 665


>02_03_0203 +
           16365262-16365644,16365774-16365869,16365991-16366297,
           16366417-16366664,16367201-16367438
          Length = 423

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 202 APTPGRYPTTARCGDFWLLGFPPGPV-RPSLVNLHSPDSSGESILTPGLVRTSS 44
           AP+ GR     R G  WLL F  GPV  PS      P S   S L P +V  ++
Sbjct: 64  APSLGRVGWPRREGAAWLLSFRAGPVSSPSSAAAGDP-SQALSALLPLVVAATA 116


>07_03_1354 - 25972597-25973787,25974381-25974680
          Length = 496

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 175 TARCGDFWLLGFPPGPVRPSLVNLHSPDSSGESILTPGLV 56
           TA  G+FW     P P+   L++  SP      +L P +V
Sbjct: 309 TAESGEFWRRACGPQPITAQLIDDPSPAFMPRPLLYPEVV 348


>12_01_0101 -
           779047-779298,779459-779711,779857-780005,780033-780281,
           780377-780571,780681-780788,780935-781156,781669-781986,
           781988-782615,783059-783135,783161-783267,783491-783619,
           783763-783820,783902-783984,784458-784539,784617-784693,
           784827-784910,784999-785068,785146-785234,785319-786008,
           786485-786797
          Length = 1410

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 48  DVRTKPGVNMDSPEESG 98
           D +T+P + MD+PEESG
Sbjct: 127 DDKTEPLITMDTPEESG 143


>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 48  DVRTKPGVNMDSPEESG 98
           D +T+P + MD+PEESG
Sbjct: 127 DDKTEPLITMDTPEESG 143


>10_05_0086 +
           9025410-9025730,9025974-9026008,9026194-9026279,
           9026602-9026740,9028504-9028663
          Length = 246

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  PEESGECRLTKEGRTGPGGKPSS 152
           P  +G  RLT  G TG GG+ SS
Sbjct: 25  PVAAGVPRLTSHGSTGGGGEESS 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,990
Number of Sequences: 37544
Number of extensions: 137712
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)