Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L05
(354 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37015| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 3e-07
SB_41166| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 7e-07
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 29 1.4
SB_36247| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.2e-08) 29 1.4
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_31367| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_57969| Best HMM Match : zf-CCHC (HMM E-Value=0.0097) 27 5.8
SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4) 27 5.8
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 27 5.8
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 26 7.7
SB_43449| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
>SB_37015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/48 (58%), Positives = 28/48 (58%)
Frame = +3
Query: 39 C*LDVRTKPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG 182
C VR K GVNM EES RL KE RTGPG K S QK P VVG
Sbjct: 16 CRSGVRAKSGVNMVPYEESRVTRLVKEERTGPGWKHSRQKLPRSTVVG 63
>SB_41166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 49.6 bits (113), Expect = 7e-07
Identities = 27/48 (56%), Positives = 27/48 (56%)
Frame = +3
Query: 39 C*LDVRTKPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG 182
C VR K GVNM EES RL KE RTGPG K S QK P V G
Sbjct: 115 CRSGVRAKSGVNMVPREESRVTRLVKEERTGPGWKHSRQKLPRSTVAG 162
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 81 SPEESGECRLTKEGRTGPGGKP 146
SPEE E L ++G+ PGGKP
Sbjct: 1611 SPEEVREINLYQDGQMTPGGKP 1632
>SB_36247| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.2e-08)
Length = 290
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 39 C*LDVRTKPGVNMDSPEESGECRLTKEGR 125
C VR K GVNM EES RL KE R
Sbjct: 16 CRSGVRAKSGVNMVPREESRVTRLVKEER 44
>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -3
Query: 193 PGRYPTTARCGDFW--LLGFPPGPVRPSLVNLHSPDSSGESILTPGLVR-TSSQHGPLS 26
P + P+ +R F L+ F PG + SPD GE +LTPG + +S+Q+ +S
Sbjct: 155 PDKRPSFSRIVIFLNHLMQFFPGADTCLVFPPGSPDLLGEQLLTPGAITGSSTQYSDMS 213
>SB_31367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 27.9 bits (59), Expect = 2.5
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +3
Query: 60 KPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RP 191
KPGV S E S + K GR GPGG S+ SP +V RP
Sbjct: 21 KPGVQSKS-EHSPQGPFGKSGREGPGG--SNSCSPGDPLVLERP 61
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 181 PTTARCGDFWLLGFPPGPVRPSLVNLHSPDSSGESILTPGLVRTSSQHGPLS 26
P+ R DF LL + L++L S S+ TPG + S+ HGP++
Sbjct: 249 PSELRSPDFSLLKLASPDIEKMLMSLQSGISASP---TPGSLFNSTAHGPVN 297
>SB_57969| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
Length = 410
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 97 PDSSGESILTPGLVRTSSQ 41
PD SGES PG V+T+ Q
Sbjct: 2 PDESGESTSVPGFVQTNLQ 20
>SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)
Length = 523
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 97 PDSSGESILTPGLVRTSSQ 41
PD SGES PG V+T+ Q
Sbjct: 2 PDESGESTSVPGFVQTNLQ 20
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 97 PDSSGESILTPGLVRTSSQ 41
PD SGES PG V+T+ Q
Sbjct: 2 PDESGESTSVPGFVQTNLQ 20
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 13 GXHWR*VAHVDWTSALSLVL 72
G HW+ A V WT L+LVL
Sbjct: 263 GKHWKNKAFVVWTLCLALVL 282
>SB_43449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 75 MDSPEESGECRLTKEGRTGPGGKPSSQKSPHR 170
MD E + +CR ++ + P G ++ SP R
Sbjct: 1 MDLLESNNQCRANQKDQLAPNGSVAANGSPRR 32
>SB_10618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 26.2 bits (55), Expect = 7.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 39 C*LDVRTKPGVNMDSPEESGECRLTKEGR-TGPGGKPSSQK 158
C VR K GVNM EES RL + G+ G +P ++K
Sbjct: 6 CRSGVRAKSGVNMVPREESRVTRLGQVGKQAGLDLQPCAEK 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,481
Number of Sequences: 59808
Number of extensions: 141131
Number of successful extensions: 364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -