Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_L05
(354 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 31 1.0
AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII colla... 31 1.3
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 30 2.4
AK055096-1|BAB70854.1| 155|Homo sapiens protein ( Homo sapiens ... 29 5.4
Z98256-3|CAB10915.2| 580|Homo sapiens synapsin III protein. 28 9.5
Z83846-3|CAB62947.2| 580|Homo sapiens synapsin III protein. 28 9.5
Z82246-1|CAI18775.1| 580|Homo sapiens synapsin III protein. 28 9.5
Z82181-1|CAI18771.1| 580|Homo sapiens synapsin III protein. 28 9.5
Z80902-1|CAI18794.1| 580|Homo sapiens synapsin III protein. 28 9.5
Z71183-1|CAB63144.2| 580|Homo sapiens synapsin III protein. 28 9.5
CR456589-1|CAG30475.1| 580|Homo sapiens SYN3 protein. 28 9.5
BC117460-1|AAI17461.1| 579|Homo sapiens synapsin III protein. 28 9.5
BC075066-1|AAH75066.1| 580|Homo sapiens synapsin III protein. 28 9.5
BC075065-1|AAH75065.1| 580|Homo sapiens synapsin III, isoform I... 28 9.5
BC042045-1|AAH42045.1| 890|Homo sapiens GARNL1 protein protein. 28 9.5
AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1 ... 28 9.5
AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1 ... 28 9.5
AK126975-1|BAC86772.1| 702|Homo sapiens protein ( Homo sapiens ... 28 9.5
AF046873-1|AAC15101.1| 580|Homo sapiens synapsin IIIa protein. 28 9.5
AB209684-1|BAD92921.1| 611|Homo sapiens Synapsin-3 variant prot... 28 9.5
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 63 PGVNMDSPEESGECRLTKE-GRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 215
PGV P GE L+ E G GP G P S SP A PG G Q +P
Sbjct: 574 PGVK-GLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEP 624
>AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII collagen
protein.
Length = 1626
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 9 GRXSLALSGPC*LDVRTKPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSP 164
G + AL G C R PG+ SP G+ + G GP G P + SP
Sbjct: 1012 GSENCALGGQCVKGDRGAPGIP-GSPGSRGDPGIGVAGPPGPSGPPGDKGSP 1062
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3
chain protein.
Length = 1670
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 PEESGECRLTKE-GRTGPGGKPSSQKSPHRAVVG*RPGVGAQ*QP 215
P GE L+ E G GP G P S SP A PG G Q +P
Sbjct: 580 PGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEP 624
>AK055096-1|BAB70854.1| 155|Homo sapiens protein ( Homo sapiens
cDNA FLJ30534 fis, clone BRAWH2001141. ).
Length = 155
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +3
Query: 51 VRTKPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RP 191
+R G S E G CR+ + T PGG PSSQ P R + G P
Sbjct: 1 MRGAAGAAGASSREDG-CRVPRPPPT-PGGVPSSQLRPERLLPGESP 45
>Z98256-3|CAB10915.2| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>Z83846-3|CAB62947.2| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>Z82246-1|CAI18775.1| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>Z82181-1|CAI18771.1| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>Z80902-1|CAI18794.1| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>Z71183-1|CAB63144.2| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>CR456589-1|CAG30475.1| 580|Homo sapiens SYN3 protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>BC117460-1|AAI17461.1| 579|Homo sapiens synapsin III protein.
Length = 579
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 400 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 450
>BC075066-1|AAH75066.1| 580|Homo sapiens synapsin III protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>BC075065-1|AAH75065.1| 580|Homo sapiens synapsin III, isoform IIIa
protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>BC042045-1|AAH42045.1| 890|Homo sapiens GARNL1 protein protein.
Length = 890
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 106 LHSPDSSGESILTPGL-VRTSSQHGPLS 26
LHSPDS S L P V+T QHG +S
Sbjct: 330 LHSPDSERSSKLQPVTEVKTQMQHGLIS 357
>AY596971-1|AAT49272.1| 2083|Homo sapiens tuberin-like protein 1
isoform 2 protein.
Length = 2083
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 106 LHSPDSSGESILTPGL-VRTSSQHGPLS 26
LHSPDS S L P V+T QHG +S
Sbjct: 1476 LHSPDSERSSKLQPVTEVKTQMQHGLIS 1503
>AY596970-1|AAT49271.1| 2036|Homo sapiens tuberin-like protein 1
isoform 1 protein.
Length = 2036
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 106 LHSPDSSGESILTPGL-VRTSSQHGPLS 26
LHSPDS S L P V+T QHG +S
Sbjct: 1476 LHSPDSERSSKLQPVTEVKTQMQHGLIS 1503
>AK126975-1|BAC86772.1| 702|Homo sapiens protein ( Homo sapiens
cDNA FLJ45028 fis, clone BRAWH3018063, highly similar
to Rattus norvegicus tuberin-like protein 1 (Tulip1). ).
Length = 702
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 106 LHSPDSSGESILTPGL-VRTSSQHGPLS 26
LHSPDS S L P V+T QHG +S
Sbjct: 94 LHSPDSERSSKLQPVTEVKTQMQHGLIS 121
>AF046873-1|AAC15101.1| 580|Homo sapiens synapsin IIIa protein.
Length = 580
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451
>AB209684-1|BAD92921.1| 611|Homo sapiens Synapsin-3 variant
protein.
Length = 611
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 145 GFPPGPVRPSLVNLHSPDSSGESILTPGL----VRTSSQHGPLSASEXRPQ 5
G P P+RP + S S G++ L P L R Q GP A +PQ
Sbjct: 432 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 482
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,054,286
Number of Sequences: 237096
Number of extensions: 812975
Number of successful extensions: 2745
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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