Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L05
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    29   1.2  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    29   1.2  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    29   1.2  
AC006776-2|AAF60627.1|  172|Caenorhabditis elegans Hypothetical ...    27   2.8  
Z49938-2|CAA90187.1|  306|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    27   3.8  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    27   3.8  
U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protei...    23   4.6  
U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protei...    26   6.6  

>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +3

Query: 60  KPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 203
           KP V    P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 133 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 180


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +3

Query: 60  KPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 203
           KP V    P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +3

Query: 60  KPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 203
           KP V    P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175


>AC006776-2|AAF60627.1|  172|Caenorhabditis elegans Hypothetical
           protein Y46H3C.5 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  DSPEESGECRLTKEGRTGPGGKPSSQK 158
           D  +E G CR  ++ RT   G P +QK
Sbjct: 30  DQVDEGGSCRKDRDERTMERGNPETQK 56


>Z49938-2|CAA90187.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.1 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 84  PEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGAQ 206
           P + GE R    G  GP G+P SQ  P  +    RPG   Q
Sbjct: 218 PGQPGESREVP-GAPGPAGQPGSQGEPGPSGPDGRPGQPGQ 257


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +3

Query: 60  KPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 203
           KP      P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 135 KPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +3

Query: 60  KPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVGA 203
           KP      P     C+   +G  GP G P +   P  A    RPG  A
Sbjct: 135 KPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182


>U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protein
           173 protein.
          Length = 325

 Score = 23.0 bits (47), Expect(2) = 4.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 117 EGRTGPGGKPSSQKSP 164
           EG  GP G P  +KSP
Sbjct: 234 EGEGGPDGIPMEKKSP 249



 Score = 22.2 bits (45), Expect(2) = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 63  PGVNMDSPEESGECRLTKEGRTGPGG 140
           PG+  +  E++G  R    G TGP G
Sbjct: 198 PGIPGNQGEDAGPGRQGMPGPTGPPG 223


>U23520-6|AAC46553.1|  287|Caenorhabditis elegans Collagen protein
           175 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +3

Query: 48  DVRTKPGVNMDSPEESGECRLTKEGRTGPGGKPSSQKSP 164
           DV+   G+N+ +   S  C+        P G P  +  P
Sbjct: 72  DVKKLMGINLRNKRNSDSCQCESRAAACPAGSPGEKGEP 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,316,024
Number of Sequences: 27780
Number of extensions: 102242
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)