Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L02
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   4.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   4.5  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  

>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 195 EGTLKNEGQEEESLAVRGKFSWVGPD 272
           EGTL+N     E +A    F W+ PD
Sbjct: 646 EGTLQNGVTTSERIARHVDFPWIQPD 671


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 338 TLLYFWLV-TIFISHKSHGIGNAVWTHPRKFTSNSQGFFFLALVLQRTFLLKYGP 177
           T L++ L+ T+F    S  +G+A+WT  R   SN     +  L+  +    ++ P
Sbjct: 667 TYLWYMLISTMFSIAYSFYMGSAIWTPWRVIFSNLPRRIYFTLLAYKDLSTEFKP 721


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 123 ENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGQEEESLAVRGKFS 257
           E+  NG G  +    +SD  + E+E  L NE + E  L     F+
Sbjct: 142 EDDFNGDGCQQMIEIESDEAISEEEEDLSNENKSESQLGESFSFN 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,429
Number of Sequences: 5004
Number of extensions: 39015
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)