Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L02
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431...    29   2.5  
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334...    29   2.5  
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327...    28   4.4  
02_04_0566 - 23912651-23913862                                         27   5.8  
01_05_0077 + 17928962-17929392,17929472-17929568,17929700-179297...    27   7.7  

>04_04_0368 +
           24741755-24741970,24742415-24742811,24742892-24743187,
           24743860-24744096
          Length = 381

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 3   AGRLKTSYEIQSKMKLLLALCLVGIVAASRPPGEAQLTSYENVHNGRGNYRFGYSQSDG 179
           +GRL  ++++ + +     +  VG    + PP +A L  + ++H+   NY  G + S G
Sbjct: 154 SGRLYLAFQLSTDLPQPHLIYAVG-PEGNLPPSDATLPMHRSMHSHAFNYTSGMASSSG 211


>03_01_0432 +
           3339235-3339915,3340313-3340561,3341071-3341139,
           3341292-3341414,3341526-3341738
          Length = 444

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 168 QSDGTVFEQEGTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTF 296
           Q DG +F +EG L++ G   E       + W GP+G+ Y V F
Sbjct: 374 QEDGELFTEEGKLRSSGSSSE-------WRWRGPNGL-YCVGF 408


>09_02_0515 +
           10121849-10122149,10132151-10132187,10132314-10132790,
           10133184-10133733
          Length = 454

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +3

Query: 117 SYENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGQEEESLAVRGKFS 257
           SY NV  G G Y F         FE      N   EE  L   G+FS
Sbjct: 135 SYGNVGMGTGEYGFASPSQTPFSFEVLSEATNNFSEERLLREEGQFS 181


>02_04_0566 - 23912651-23913862
          Length = 403

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 54  LALCLVGIVAASRPPGEAQLTSYENVHNG-RGNYRFGYSQSDGTVFEQEG 200
           L + LVG   A   PG+A  +S   V +G    Y FG S SD   + +EG
Sbjct: 13  LVVLLVGTCQARPAPGKAASSSSSGVVDGITAIYNFGDSISDTGNYLREG 62


>01_05_0077 +
           17928962-17929392,17929472-17929568,17929700-17929747,
           17929833-17929996,17930454-17930469
          Length = 251

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 162 YSQSDGTVFEQEGTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADED 311
           +++ D T+ + E  L+   QE      R KFS VG D V   V F+AD++
Sbjct: 165 FAEKDSTLAKSE-ILQGFTQETS----RKKFSEVGSDKVEIKVPFIADDE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,745,516
Number of Sequences: 37544
Number of extensions: 274436
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)