Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_L02
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07)         29   2.6  
SB_49993| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)                 28   3.4  
SB_44792| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)                 28   3.4  
SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   6.0  
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               27   6.0  
SB_28411| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +3

Query: 270 DGVTYTVTF---VADEDGYQPEIEQGPGGAVPSAILHSL 377
           DG T+T      + D+DG+ PE+   PG  + S++LHS+
Sbjct: 56  DGTTHTPNVCINLTDDDGFVPELPSLPG--MKSSLLHSM 92


>SB_12952| Best HMM Match : Peptidase_M50 (HMM E-Value=8.9e-07)
          Length = 413

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 332 LYFWLVTIFISHKSHGIGNAVWTHPRKFTSNSQGFFFLAL 213
           L ++L+T+ +S   H +G+AV     +   N  G FF+A+
Sbjct: 125 LMYYLITLAVSGVFHEMGHAVAAVREQVRVNGFGMFFMAI 164


>SB_49993| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)
          Length = 331

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 230 FFFLALVLQRTFLLKYGPIRLAISKSVITPSIMHIFV 120
           FFFL   LQ  F + YG + L      ++P I ++F+
Sbjct: 262 FFFLGGDLQLYFKVYYGMLFLVCLNCAVSPCIYYVFI 298


>SB_44792| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-13)
          Length = 331

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 230 FFFLALVLQRTFLLKYGPIRLAISKSVITPSIMHIFV 120
           FFFL   LQ  F + YG + L      ++P I ++F+
Sbjct: 262 FFFLGGDLQLYFKVYYGMLFLVCLNCAVSPCIYYVFI 298


>SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 198 GTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDGYQPEIEQ 335
           GTLK+ G  E++L++         DG   ++   AD+DGYQ E+++
Sbjct: 63  GTLKDHG--EKALSMEDSLQCPLHDG---SIVLGADQDGYQSEMDE 103


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 353 YSSAGTLLYFWLVTIFISHKSHGIGNA 273
           +SS GT+L   ++TIFI H+   +  A
Sbjct: 597 FSSLGTMLSITVITIFIKHRETAVVKA 623


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 108 QLTSYENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGQEEESLAV 242
           +L+ YE +H   G    G +Q++GT + +EG    +G E ++ A+
Sbjct: 442 ELSVYERLHKISG----GRAQTNGTSYVREGPRSPDGSESDNSAL 482


>SB_28411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 144 GNYRFGYSQSDGTVFEQEGTLKNEGQEEESLAVRGKFSWVGP 269
           G   F + ++    F+++G L +E  EE    V+G+ +W+ P
Sbjct: 35  GGTPFIWKRTGSMYFDEDGDLAHEFYEEVRPEVKGEKAWMRP 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,416
Number of Sequences: 59808
Number of extensions: 299040
Number of successful extensions: 679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)