Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K22
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   0.55 
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    29   0.55 
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    28   1.3  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.2  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   3.9  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   6.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.8  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 621 LQCDRSKLNSGMTISRILLRCVLKPSRSLTIVTKAWFYSTNTISS 487
           L+ D +K  S    SRILL      +  L IVTK  F+  NT+S+
Sbjct: 129 LEQDTAKSTSAKNPSRILLDYNRAGTPLLEIVTKPCFHDVNTVSA 173


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 391 SSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSI-----GGIKPSFSYDGQ 537
           S + YQ   Q+ +Q+ Q   N  G+ +S  +G  Y        GIKP F +DG+
Sbjct: 36  SMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGK 89


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 299 SLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPAL- 475
           ++RRA H +  L R +  L +  + +H +     +   H+K +     +P +R     L 
Sbjct: 321 NIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKP-LRFCAERLT 379

Query: 476 -LMSELDIVLVE 508
            L+  L I LVE
Sbjct: 380 SLVRALQISLVE 391


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 353  LDSLHRTMHFLDTLQQAISHHIKSVH 430
            L  LHR    LD L+Q I + I+SVH
Sbjct: 1101 LTHLHRAYKGLDPLKQIIGYPIRSVH 1126


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 315 YIFWTVSIELYIFWTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEF 455
           +++  V+++  I   +   +C++W +FSKL  II N+  +    H F
Sbjct: 13  FLYLMVNVQCRIKEIMYWNICLYWDVFSKL--IIYNKVCQFGRIHIF 57


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 336 IELY--IFWTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEFAW 461
           I+LY  + W  S   CI +  F + S +    YT     + F W
Sbjct: 73  IQLYEPLLWLSSFPFCILYVGFGENSVLYHEMYTMEMALYCFRW 116


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 469 SSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHA 591
           ++ N G  +S G    S  +  QG+ G  + S   PA  +A
Sbjct: 121 NNANTGTSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNA 161


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 418 DMMADSLLKSVQKMHSSMETVQKMYSSMETVQ 323
           DM+ + LLK   K HS+ E ++++   + ++Q
Sbjct: 397 DMLRNKLLKEEHKHHSTSEKLEELSKYVASIQ 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,278
Number of Sequences: 5004
Number of extensions: 61498
Number of successful extensions: 244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)