Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_K22
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 30 2.3
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 29 3.1
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 4.1
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448... 29 4.1
12_02_0589 + 20850249-20850491,20850583-20851839 29 5.4
03_06_0193 + 32243458-32243556,32243566-32244273 29 5.4
03_06_0146 - 31976538-31978643,31978653-31978751 28 7.1
03_01_0092 - 731069-731434,731569-733080 28 7.1
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 28 9.4
07_01_0281 - 2067696-2068862 28 9.4
01_06_1140 - 34836967-34836996,34837107-34838771 28 9.4
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 341 LDGDCPEDV*LDGDCPADA*LDEECP 264
L PED+ +G+C LDEECP
Sbjct: 1058 LSSSDPEDIGTEGECAPRGHLDEECP 1083
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 356 PEDV*LDGDCPEDV*LDGDCPADA 285
PED+ +G+C LD +CP DA
Sbjct: 1063 PEDIGTEGECAPRGHLDEECPGDA 1086
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 353 LDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSELDIVLVE-*NQALVT 529
LD L + D + A+S+ I H+ N R ALL ++ LVE NQA +
Sbjct: 129 LDKLESAIVRCDNIHGALSYCINLSHQYVNHREYRFEDDALLAYQIAFDLVENENQAFLL 188
Query: 530 MVKDLLGFST 559
V++ L T
Sbjct: 189 NVRNRLASQT 198
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 391 SSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQE 570
++A+ QPS Q +T++ PAT + I + A + YDG G G Q +S
Sbjct: 457 AAAASQPSPQ-ATKSPLPATPQTQSSMDIVMTAAEAHDA-----GYDGSGGGGGQPSSSR 510
Query: 571 YP-ANGHATIQL 603
+P A HA IQL
Sbjct: 511 WPKAEVHALIQL 522
>05_07_0027 +
27140626-27141457,27143101-27143901,27144838-27144873,
27145133-27145420,27145836-27146289,27146520-27146964
Length = 951
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 29 RLYKSADRSLEGNLFSSCLSTLV 97
RL+K+ D SLE ++ SC ST+V
Sbjct: 449 RLHKNKDDSLESDILGSCSSTIV 471
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 639 ACAVSG-LQCDRSKLNSGMTISRILLRCVLKPSRSLTIVTKAWFYSTNTISSSDINR 472
A AVSG + + G T+ R LL+ + P RS +V + W T+ +NR
Sbjct: 10 AAAVSGGAEGGGGEGRGGDTLGRRLLKLIY-PKRSAAVVLRRWAEEGRTVQKYQLNR 65
>03_06_0193 + 32243458-32243556,32243566-32244273
Length = 268
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +1
Query: 454 SHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHG 633
S D S+ + G +GG + +G A + A H TI + + LQP+
Sbjct: 8 SDSDGDSVELHDGSDVGGSDSESGFAVRGRAAAAVGADTPAALPHTTIAVEAVPLQPSPS 67
Query: 634 AGG 642
G
Sbjct: 68 PPG 70
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +1
Query: 454 SHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHG 633
S D S+ + G +GG + +G A + A H TI + + LQP+
Sbjct: 8 SDSDGDSVELHDGSDVGGSDSESGFAVRGRAAAVVGADTPAALPHTTIAVEAVPLQPSPS 67
Query: 634 AGG 642
G
Sbjct: 68 PPG 70
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 451 NSHGDASSINVGAGYSIGGIKPSFSYDGQGSAG 549
N +G AS+ N G G S GG++ S +G +AG
Sbjct: 448 NGNGWASANNGGGGSSSGGMQTKASNNGTATAG 480
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 270 LFIKLCICWTVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSK 401
LF +CW +EL+ + ++ I + +++ +C+F+ S+
Sbjct: 160 LFFLATMCWYQGIELWTSVLIRFKISISYLLALFVCLFFGYISR 203
>07_01_0281 - 2067696-2068862
Length = 388
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 430 QNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQ 555
Q+ + T++ G S + G G S G KP+ S SAG Q
Sbjct: 231 QHGRITTSNGGSGSGSDKGKGVSYAGDKPASSSSSSSSAGQQ 272
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 762 SAFTANVEXCNAVGWLQGKSSRIKXMAQLIHNLGDI 655
SAF V CNA+ L GK ++ A + + DI
Sbjct: 232 SAFEQEVSVCNALVDLYGKCHKVDDAAMVFEGMADI 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,956,280
Number of Sequences: 37544
Number of extensions: 443440
Number of successful extensions: 1303
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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