Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K21
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   4.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   4.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 530 HNIRHLTYKQICVKNFKSLFMSLLFYKEI 616
           +N  +  YK++   N+K L+ ++ + ++I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 530 HNIRHLTYKQICVKNFKSLFMSLLFYKEI 616
           +N  +  YK++   N+K L+ ++ + ++I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 108 AHCENFVNLEGKHINIIHN 164
           + C NF N +  H N  HN
Sbjct: 412 SRCANFDNQDNNHYNHNHN 430


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 KHINIIHNGEDGIST 185
           KHIN  HN ++G+ T
Sbjct: 222 KHINTRHNTKNGMKT 236


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 LFQPGVEMPSSPL*IIFMCL 140
           LF PG E+P+  L  +F+ L
Sbjct: 63  LFTPGQELPARGLTAVFLGL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,483
Number of Sequences: 438
Number of extensions: 4700
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)