Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_K20
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 60 2e-09
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 54 1e-07
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 46 3e-05
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 43 2e-04
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 31 0.94
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 29 3.8
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 28 8.8
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +2
Query: 449 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMTLWRTSMGQ 628
W+ KM+ YN+ GGK RG++ V SY + + +V + +AC LGWCVE W +
Sbjct: 99 WVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVE---WLQASAL 155
Query: 629 HLDHVTGNRKT 661
LD +T N T
Sbjct: 156 VLDDITDNAYT 166
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +2
Query: 458 KMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMTLWRTSMGQHLD 637
KML YN++GGK RGI+ + S+K ++ + + + +AC LGWC+E W + LD
Sbjct: 70 KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIE---WLQAYFLVLD 126
Query: 638 HVTGNRKT 661
+ N +T
Sbjct: 127 DIMDNSQT 134
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +2
Query: 449 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 586
WL +M+ YN+ GGK RG++ + SY +++ +VTE +AC LG
Sbjct: 84 WLAQMIDYNVPGGKLNRGLSVIDSYLLLKQGSEVTEDDFFLACVLG 129
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +2
Query: 449 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMT 604
W+ +ML YN+ GGK RG++ V SYK ++ +++ + +A LG C ++T
Sbjct: 47 WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLG-CFKLT 97
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 31.1 bits (67), Expect = 0.94
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 366 FFSLIISRFFEAVVIFALLFLYLI 295
FFSL I +F ++ +FAL+F Y+I
Sbjct: 362 FFSLSIRKFLISIAVFALVFFYMI 385
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 668 NSLFFDFLLHDLNVDPLKCAIKSFRHTIPV 579
NS D + + + +KC KS+R TIPV
Sbjct: 783 NSCLMDLYVERMRFEAVKCMSKSYRPTIPV 812
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 27.9 bits (59), Expect = 8.8
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +2
Query: 368 MFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVIS-YKTIEKPE 544
MFD+++ EV+ L+N + VPQ L K + + ++G+ +++ Y KPE
Sbjct: 133 MFDEIVMEVMWGLKNLMHVL-VPQEKMKLSKDDYLPM-----SQGLYMLLNRYGLDVKPE 186
Query: 545 KVTEHTLKMACKLGWC 592
VT+ +K+AC L C
Sbjct: 187 MVTDSIIKLACFLLDC 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,180
Number of Sequences: 37544
Number of extensions: 368635
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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