Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K19
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    37   0.003
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.6  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.6  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   4.5  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   4.5  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   4.5  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   5.9  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   5.9  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   5.9  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   5.9  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 57  ALDKAARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQL 215
           A+  +   D K +VV + +   A +CSKY PSIP      +TR  Q   QS L
Sbjct: 394 AIGASIESDAKAIVVLSTSGNTARLCSKYRPSIP---IVMVTRCPQRARQSHL 443


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 554 TRSTIRSI*NNSHANPSVFSAKEPISHVV 468
           T S++ SI  NSH NP    A +P++  V
Sbjct: 663 THSSVNSI--NSHGNPRTVDANDPVADTV 689


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 374 RRICNNGSKTWCCRYCRQENV 436
           R++  NGS+ + C YC  ENV
Sbjct: 369 RQLSRNGSQRFKCPYCPNENV 389


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
 Frame = +3

Query: 15  LLAANVRIFKEQGQALDKAARKDVKV--LVVGNPANTNALICSKYAPSIPKENFTAMTRL 188
           ++   +R   ++ + L +    D+ V  L + N    + L+    +   PK +       
Sbjct: 153 IIFLTMRALLDRVEGLKRTMNVDISVSYLEIYNEKIRDLLVQDPLSMEKPK-SLNICEDA 211

Query: 189 DQNRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVA 314
           +QN +   L+      +++V  +II GN + T  P  +NAV+
Sbjct: 212 EQNVSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEANAVS 253


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 285 QFPDASNAVAIVGGAQKSVSE 347
           QF D +N+   VGG  K VSE
Sbjct: 296 QFADTANSTVFVGGLSKFVSE 316


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
 Frame = +3

Query: 108 PANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQL---------AAKIGVPVKDVKRVI 260
           P N+N    S    SIP    T       N AQS L         A K+G      K  +
Sbjct: 240 PPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTARKLGFASSQTKSAV 299

Query: 261 IWGNHSSTQFPDAS 302
              NHS     DAS
Sbjct: 300 S-NNHSRNSSKDAS 312


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 157 GIDGAYLEHIRAFVLAGLPTTR 92
           G+ G+Y EH+    + G+P+T+
Sbjct: 87  GVAGSYAEHVPVVHIVGMPSTK 108


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 283 VDEWFPQMITLLT 245
           VDEWFP+M T LT
Sbjct: 231 VDEWFPKMETSLT 243


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 559 LYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLAKSW 669
           L +HS   +   S KLLR S   IL V C    A+ W
Sbjct: 174 LIVHSSKFMSDHSQKLLRNSKHGILVVGCGQSAAEIW 210


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 213 LAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGA---QKSVSEIIND 359
           LA + G+P  +V+ V  + NH  +  P  S   + +G A   +K V+  I D
Sbjct: 639 LARRRGLPRLEVRGVAAFTNHLESSHPPISTVDSSIGSASVVEKGVANSIVD 690


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 157 GIDGAYLEHIRAFVLAGLPTTRTFTS 80
           GI GAY E++   +++G P T   +S
Sbjct: 89  GIGGAYAENLPVILVSGSPNTNDLSS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,370
Number of Sequences: 5004
Number of extensions: 63510
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)