Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_K19
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 239 1e-63
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 239 1e-63
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 167 7e-42
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 6.1
12_01_0865 + 8238521-8238810,8239115-8239304,8239406-8239606,823... 28 8.1
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 8.1
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 239 bits (586), Expect = 1e-63
Identities = 114/223 (51%), Positives = 151/223 (67%), Gaps = 1/223 (0%)
Frame = +3
Query: 15 LLAANVRIFKEQGQALDKAARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQ 194
+++ NV I+K Q AL+ A + KVLVV NPANTNALI ++APSIP++N T +TRLD
Sbjct: 102 VMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDH 161
Query: 195 NRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLK 374
NRA Q++ K+ V V DVK IIWGNHSSTQ+PD ++A +K V E++ DD +L
Sbjct: 162 NRALGQISEKLNVQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLN 221
Query: 375 GAFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDHMRDWFLGT-EDRWVSMGVVSDGSYGTP 551
F++TVQ+RGAA+I DH+RDW LGT E +VSMGV SDGSYG P
Sbjct: 222 TEFISTVQQRGAAIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVP 281
Query: 552 RDVVYSFPVTVTNGKWKIVEGLTISDFARQMLDATGKELVEXK 680
++YSFPVT + G+W IV+GL I +F+R+ +DAT +EL E K
Sbjct: 282 AGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 239 bits (586), Expect = 1e-63
Identities = 118/226 (52%), Positives = 147/226 (65%), Gaps = 1/226 (0%)
Frame = +3
Query: 15 LLAANVRIFKEQGQALDKAARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQ 194
L++ NV I+K Q AL + A + KVLVV NPANTNAL+ ++AP+IP +N T +TRLD
Sbjct: 138 LISKNVTIYKSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDH 197
Query: 195 NRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLK 374
NRA Q+A K+ V V DVK IIWGNHSSTQFPDAS+A ++ V E+I D+ +L+
Sbjct: 198 NRALGQVAEKLNVHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLR 257
Query: 375 GAFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDHMRDWFLGT-EDRWVSMGVVSDGSYGTP 551
FVT VQ+RGAAVI DHMRDW LGT + WVSMGV SDGSYG P
Sbjct: 258 EEFVTDVQQRGAAVIKARKQSSSLSAASAACDHMRDWILGTPKGTWVSMGVYSDGSYGVP 317
Query: 552 RDVVYSFPVTVTNGKWKIVEGLTISDFARQMLDATGKELVEXKQEA 689
V +SFPVT G+W +V+GL I DFAR ++ + EL E K A
Sbjct: 318 EGVFFSFPVTCEKGEWSVVQGLEIDDFARSKMETSATELKEEKSIA 363
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 167 bits (406), Expect = 7e-42
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 3/226 (1%)
Frame = +3
Query: 15 LLAANVRIFKEQGQALDKAARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQ 194
LL N +IF EQG+AL+ A ++VKV+VVGNP NTNALIC K AP+IP +NF A+TRLD+
Sbjct: 170 LLDINGQIFAEQGKALNSVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 229
Query: 195 NRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLK 374
NRA+ QLA K GV V + IWGNHS+TQ PD NA + G + V E+I D +L+
Sbjct: 230 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAK--ING--RPVKEVIKDTKWLE 285
Query: 375 GAFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDHMRDWFLGT-EDRWVSMGVVSDGS-YGT 548
F TVQKRG +I D +R T E W S GV + G+ YG
Sbjct: 286 DEFTKTVQKRGGVLIQKWGRSSAASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPYGI 345
Query: 549 PRDVVYSFPV-TVTNGKWKIVEGLTISDFARQMLDATGKELVEXKQ 683
D+V+S P + +G +++V+ + + DF + + + EL+ K+
Sbjct: 346 AEDIVFSMPCRSKGDGDYELVKDVAMDDFLWERIKKSEAELLAEKR 391
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 592 PLVTVTGNEYTTSRGVP*DPSETTPMLTHLSSVPRNQS 479
P VT G+E P DP+E +L + ++P + S
Sbjct: 107 PSVTAVGSERCVVNSAPDDPTENVSILDEMRNIPLSTS 144
>12_01_0865 +
8238521-8238810,8239115-8239304,8239406-8239606,
8239715-8239954
Length = 306
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 155 NRWSIFRTY*SICIGWVANNKDLHIFTSRFVQSLALLFEDAHISSKKI 12
N WS++ S VA K LH+F + S +L+FED + +
Sbjct: 57 NNWSVYDGIGSDA-KLVAYAKGLHVFAGAWHNSFSLVFEDERLKGSTL 103
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 538 DPSETTPMLTHLSSVPRNQSLMWSDAALAAERADD 434
+PSE +P ++ P NQ L+W A DD
Sbjct: 619 NPSEASPEWVSDNAYPTNQPLIWYKTKFTAPAGDD 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,513,253
Number of Sequences: 37544
Number of extensions: 424215
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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