Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K18
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   5.6  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   9.8  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 125 KYISIQGEAELFNMVYVTGDGT 190
           K + I+G  +L N+V VTGDGT
Sbjct: 862 KQLLIEGLQKLGNVVAVTGDGT 883


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 346 TTNQKVWGLWSIWLWALTTTYGRLRLWWIMDVFKAV-ITFQY*QYLKKTNIVL 501
           TTN+ + G+W+ W+ +     G  +   +    K + + F++ +YL++TN++L
Sbjct: 562 TTNEII-GVWNQWVVSYNRKVGMQQNADLFFKRKTLRVVFEHWRYLRETNMLL 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,596
Number of Sequences: 5004
Number of extensions: 52607
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)