Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K14
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    81   1e-16
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    77   2e-15
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    60   4e-10
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    40   4e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    34   0.021
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   3.2  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   9.9  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 37/94 (39%), Positives = 61/94 (64%)
 Frame = +3

Query: 18  IQQFLKAALSKAKVVVFSKSYCPYCKLAKAVFEQVKQPIKVIELNERDDGNTIQDNLAQL 197
           ++ F+ +A++   VVVF+KSYCPYC   + V    K   +V +++  ++G+ IQ  L + 
Sbjct: 4   VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63

Query: 198 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 299
           TG RTVP +FI+   VGG SD +AL++ G+L+ +
Sbjct: 64  TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 37/92 (40%), Positives = 53/92 (57%)
 Frame = +3

Query: 27  FLKAALSKAKVVVFSKSYCPYCKLAKAVFEQVKQPIKVIELNERDDGNTIQDNLAQLTGF 206
           F++ A+S   V VFSKS+CP+CK AK    +   P K  EL++ ++G+ IQ  L + T  
Sbjct: 8   FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67

Query: 207 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 302
            TVP +F     +GG SD+  L  SG L  M+
Sbjct: 68  STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
 Frame = +3

Query: 57  VVVFSKSYCPYCKLAKAVFEQVKQ---PIKVIELNERDDGNTIQDNLAQLTGFRTVPQVF 227
           V++FS+  CPY   AK +  +  +   P  V+E+ + +    ++D L+ ++   T+P +F
Sbjct: 68  VIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIF 127

Query: 228 INGNCVGGGSDVKALYESGKLEPML 302
           + G+ +GG   V+ALY+  KL+  L
Sbjct: 128 VGGHSIGGSDSVRALYQEEKLQSTL 152


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
 Frame = +3

Query: 9   SLXIQQFLKAALSKAKVVVFSKSYC--PYCKLA-KAV----FEQVKQPIKVIELNERDDG 167
           S   +Q L+ A+ +  +V+F K     P C  + KA+     E V    K++  N   + 
Sbjct: 22  STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASD-KLVTYNVLSN- 79

Query: 168 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 302
           + +++ + + + + T+PQ++ING  VGG   + ++++SG+L  +L
Sbjct: 80  DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 168 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 302
           ++++  L   + + T PQ++I G  VGG   V  + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 396 NLKRK*HFICTPKYKFKYANNNKTI 322
           N K   HF+C    KF+  NN K++
Sbjct: 57  NSKANNHFLCNSPLKFEIFNNEKSV 81


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 155 FIQLNNFNWLLHLLKNSFCQLTVRT 81
           F  +NN+NWL+ + K S  Q   RT
Sbjct: 96  FCNVNNWNWLMSVSKYSHLQEKNRT 120


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 96  LAKAVFEQVKQPIK-VIELNERDDGNTIQDNLAQLTGFRTV 215
           L K V +    PI+  +  N+   G+TI   LA +TG RT+
Sbjct: 381 LLKKVAQLADVPIQSFVVRNDSPCGSTIGPKLAAMTGMRTL 421


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 204 NQSVVRDYLEWCFHH 160
           + +V+R  LEWC HH
Sbjct: 47  SSNVLRKVLEWCEHH 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,816
Number of Sequences: 5004
Number of extensions: 53806
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)