Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_K06
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42) 177 5e-45
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 158 4e-39
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) 138 5e-33
SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06) 93 2e-19
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09) 73 3e-13
SB_2290| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 35 0.050
SB_36483| Best HMM Match : Ras (HMM E-Value=0) 31 0.61
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08) 30 1.9
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_43011| Best HMM Match : AgrD (HMM E-Value=3.4) 30 1.9
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 29 2.5
SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05) 29 3.3
SB_53183| Best HMM Match : Ras (HMM E-Value=0) 29 4.3
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 29 4.3
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 29 4.3
SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44) 28 5.7
SB_29238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4) 28 7.5
SB_58461| Best HMM Match : WH2 (HMM E-Value=0.63) 28 7.5
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72) 27 9.9
SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 27 9.9
>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
Length = 275
Score = 177 bits (432), Expect = 5e-45
Identities = 85/186 (45%), Positives = 132/186 (70%), Gaps = 4/186 (2%)
Frame = +2
Query: 86 LSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVE---SSPSPHN 256
L G+VGFD++ +Q+ KS++ GF FN++ +G +GLGKST++++LF + S+ P
Sbjct: 91 LDGYVGFDTVQEQIRRKSLKRGFEFNLMVVGASGLGKSTMVNTLFKGKLSRPTSTGKPTI 150
Query: 257 LP-TVKLKAHTYELEESNVRLKLTICDTVGYGDQVNKEDSFKAVVDYIDAQFEAYLQEEL 433
+P TV +K+ ++ +EE VRLKLTI DT G+GDQ+N + ++ ++DYI++Q++ +L EE+
Sbjct: 151 IPKTVDVKSVSHVIEEKGVRLKLTITDTPGFGDQINNDKCWEPIMDYINSQYDKFLTEEV 210
Query: 434 KIKRSLSSYHDSRLHVCLYFICPTGHGLKSIDLVCMKKLDTKVNIIPIIAKADTISKTEL 613
I+R DSR+H CLYFI PTGH LK ID+ MK+LD VNI+P+IAKAD ++ E
Sbjct: 211 TIERK-PRIPDSRVHCCLYFIAPTGHRLKPIDVEFMKRLDKCVNIVPVIAKADNMTLEER 269
Query: 614 QRFKSK 631
+ F+ +
Sbjct: 270 EAFRRR 275
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 158 bits (383), Expect = 4e-39
Identities = 76/164 (46%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
Frame = +2
Query: 86 LSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLP- 262
+ G+VGF +LP+Q+ KS++ GF F ++ +GE+GLGKSTL++SLF T++ + S ++
Sbjct: 1 MEGYVGFANLPNQVFRKSVKKGFEFTVMVVGESGLGKSTLLNSLFLTDLYTPSSYPSIKE 60
Query: 263 ----TVKLKAHTYELEESNVRLKLTICDTVGYGDQVNKEDSFKAVVDYIDAQFEAYLQEE 430
TV++K T EL+E VRL+LT+ DT G+GD V+ D +K V+ YID++FE +L E
Sbjct: 61 KLNKTVEVKPCTVELKEGGVRLRLTVVDTPGFGDAVDNTDCWKPVIKYIDSKFEEHLNAE 120
Query: 431 LKIKRSLSSYHDSRLHVCLYFICPTGHGLKSIDLVCMKKLDTKV 562
+++R S + D+R+H CLYFI PTGH LK +D+ MKKL K+
Sbjct: 121 SRVQR--SPFPDNRVHCCLYFISPTGHSLKPLDIEFMKKLHNKI 162
>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 272
Score = 138 bits (333), Expect = 5e-33
Identities = 62/128 (48%), Positives = 94/128 (73%)
Frame = +2
Query: 263 TVKLKAHTYELEESNVRLKLTICDTVGYGDQVNKEDSFKAVVDYIDAQFEAYLQEELKIK 442
TV ++++T E+EE VRL+LT+ DT G+ D V+ S++ +VDYID QFE+YL++E +
Sbjct: 36 TVHIESNTVEIEEKGVRLRLTVVDTPGFADAVDNTYSWEPIVDYIDHQFESYLRDESGLN 95
Query: 443 RSLSSYHDSRLHVCLYFICPTGHGLKSIDLVCMKKLDTKVNIIPIIAKADTISKTELQRF 622
R + D+R+H CLYFI P GHGL+ +D+ MK L TKVNI+P+IAK+D+++KTE+ R
Sbjct: 96 RR--NIMDTRVHCCLYFINPHGHGLRPVDVEFMKALHTKVNIVPVIAKSDSLTKTEISRL 153
Query: 623 KSKIMQXL 646
K K++ +
Sbjct: 154 KRKVLDEI 161
>SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)
Length = 101
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Frame = +2
Query: 86 LSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVES-----SPSP 250
++ +VGF +LP+Q+ KS++ GF F ++ +GE+GLGKSTL+DSLF T++ S S
Sbjct: 1 MANYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLIDSLFLTDLYSDRKILSAEE 60
Query: 251 HNLPTVKLKAHTYELEESNVRLKLTICDTVGYGDQVNKED 370
TVK++ T E+EE V+L+LT+ DT GYGD +N ++
Sbjct: 61 RIKKTVKIETSTVEIEERGVKLRLTVVDTPGYGDGINHKN 100
>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
Length = 337
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +2
Query: 515 LKSIDLVCMKKLDTKVNIIPIIAKADTISKTELQRFKSKIMQXL 646
LKS+DLVCMK+LD KVNIIPIIAKADTI+K+EL++FK KIM L
Sbjct: 22 LKSLDLVCMKQLDKKVNIIPIIAKADTIAKSELKQFKQKIMDEL 65
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 314 LKLTICDTVGYGDQVNKEDSFKAV 385
LKLTI DTVGYGDQ+NKEDS K++
Sbjct: 2 LKLTIVDTVGYGDQINKEDSLKSL 25
>SB_2290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 515 LKSIDLVCMKKLDTKVNIIPIIAKADTISKTELQRFKSK 631
LK +D+ MK L VNI+P+I KADT++ TEL+ K +
Sbjct: 2 LKPLDIEFMKALHHIVNIVPVIGKADTLTPTELKEMKRR 40
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 35.1 bits (77), Expect = 0.050
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 FVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELE-ESNVRLKLTI 328
+ F I+ IG++ +GKS+L+ E ++ PTV + H LE + +VR+KL I
Sbjct: 12 YQFRIILIGDSTVGKSSLLRQF----TEGQFFENSDPTVGVDFHVRVLELKGDVRIKLQI 67
Query: 329 CDTVG 343
DT G
Sbjct: 68 WDTAG 72
>SB_36483| Best HMM Match : Ras (HMM E-Value=0)
Length = 213
Score = 31.5 bits (68), Expect = 0.61
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Frame = +2
Query: 125 LVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEES 304
+V +S+ + +VF +L +G+ +GKS+L+ + E + V H ++L+
Sbjct: 1 MVDRSLAD-YVFKVLVLGDCNVGKSSLIRRFHDD--EFNAQLCTTIGVDFFIHDFDLDGK 57
Query: 305 NVRLKLTICDTVGYGDQVNKEDSFKAVV-DYIDAQFEAYLQEELKIKRSLSSYHDSRLH 478
V+L+L DT G E+ ++A+ + A L ++ +K S S D LH
Sbjct: 58 KVKLQL--WDTAG-------EEKYRALSRSFFRGADGALLVFDVSVKESFDSIRDYWLH 107
>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1175
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +2
Query: 122 QLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAH------ 283
QLV ++ +G+ I G+TG GK+ M+ N P ++ V L H
Sbjct: 296 QLVQSAL-DGYNVCIFAYGQTGSGKTYTMEGDHNNLEHRGMIPRSMEQVFLNTHKLQEKG 354
Query: 284 -TYELEESNVRL-KLTICDTVGYGDQVNKED 370
Y+++ S + + TI D +G GD+ K +
Sbjct: 355 WKYKMDVSFLEIYNETIRDLLGSGDETIKHE 385
>SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)
Length = 340
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +2
Query: 158 FNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKLTICDT 337
F ++ +G TG+GKS L+++L V + T + H E+ R ++T+ D+
Sbjct: 61 FKVIVVGRTGVGKSHLVNTLMGEYVVEEGQDLDPCTSTVSKH----EKRIGRTRVTVWDS 116
Query: 338 VGYGDQVNKEDSF 376
G D ++++ +
Sbjct: 117 PGLQDGHHEDEVY 129
>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1342
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +2
Query: 128 VSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESN 307
+S+ I G + + LG + LMD + ++ P P P V+ + E+
Sbjct: 595 ISECIAQGKRPQLSLVRRVSLGVNELMDVSGKSGIQHRPPPPLPPKVESAELSLWSIETQ 654
Query: 308 VRLKLTICDTVGYGD 352
+R+K+ D + GD
Sbjct: 655 LRVKILSADNINVGD 669
>SB_43011| Best HMM Match : AgrD (HMM E-Value=3.4)
Length = 241
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 212 SLFNTNVESSPSPHNLPTVKLKAHTYEL 295
+L++T +E +P P +P + LK +EL
Sbjct: 134 ALWSTKIEKAPGPDGIPNIVLKVFAFEL 161
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +2
Query: 152 FVFNILCIGETGLGKSTLM-----DSLFNTNVESSPSPHNLPTVKLKAHTYELE 298
++F +L IG++G+GKS+L+ D+ NT + + + T+ + T +L+
Sbjct: 7 YLFKLLLIGDSGVGKSSLLLRFADDTFSNTYISTIGVDFKIRTLTVDGKTIKLQ 60
>SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05)
Length = 68
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +2
Query: 131 SKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNV 310
+K + ++F ++ IG++G+GKS L+ S F N + S T+ ++ T ++
Sbjct: 3 TKDDEYDYLFKVVLIGDSGVGKSNLL-SRFTRNEFNLESK---STIGVEFATRSIQVDGK 58
Query: 311 RLKLTICDT 337
+K I DT
Sbjct: 59 TIKAQIWDT 67
>SB_53183| Best HMM Match : Ras (HMM E-Value=0)
Length = 834
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 152 FVFNILCIGETGLGKSTLM----DSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVR 313
++F +L IG++G+GK+ ++ D FNT S+ L T+ AHT E + R
Sbjct: 8 YLFKLLLIGDSGVGKTCILFRFSDDAFNTTFISTIENVLLNTL---AHTLNFERTLFR 62
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Frame = +2
Query: 143 QNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKL 322
Q+G + C + GL +T N+ + S+P L + +Y L E + KL
Sbjct: 223 QSGTYMQVSCDNQKGLNPNTEQGLSTNSGIRSNPDDWVLVLEDMNYSSYSLMEVSPNKKL 282
Query: 323 TICDTV-GYGDQVNKEDSFKAVVDYIDAQFEAYLQEELKIKRSLSSYHDSRLHVC 484
+ GY ++ + +K ++ +AY + L + SL H L C
Sbjct: 283 VAFGNLKGYIKVIDSDFKWK------PSEVQAYSSKVLSLLWSLGQ-HQYNLFTC 330
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 152 FVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKLTIC 331
+++ I+ IG++G+GKS+L+ S F N S T+ ++ T ++ +K +
Sbjct: 11 YLYKIVLIGDSGVGKSSLL-SRFTRNEFDIESK---STIGVEFATRSIQVEGKIIKAQVW 66
Query: 332 DTVG 343
DT G
Sbjct: 67 DTAG 70
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 164 ILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKLTICDTVG 343
IL +GE+G+GKS+L+ L T+ P V K T +E + + KL I DT G
Sbjct: 11 ILIVGESGVGKSSLL--LRFTDDTFDPDIGATIGVDFKVKTLTVEGN--KAKLAIWDTAG 66
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +2
Query: 104 FDSLPDQLVSKSIQNGFVFN-ILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKA 280
F +P +++ K + F + +G +G+ M L T H LP ++L
Sbjct: 1764 FKKIPMEVIKKIEKKEFPWERYYDLGPNEIGELVHMPKLGKT---LHKLVHQLPKMELAT 1820
Query: 281 HTYELEESNVRLKLTICDTVGYGDQVN-KEDSFKAVVDYIDAQ 406
H + S + ++LT+ + ++V+ ++F +V+ +D++
Sbjct: 1821 HIQPITRSTLSVELTVTPDFQWDEKVHGNSEAFWILVEDVDSE 1863
>SB_58218| Best HMM Match : Ras (HMM E-Value=1.4013e-44)
Length = 212
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/67 (25%), Positives = 36/67 (53%)
Frame = +2
Query: 143 QNGFVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKL 322
+ G +F ++ +GE G+GK+ SLF E+ +P T+ + + + ++ ++ L
Sbjct: 7 ERGPLFKVVLLGEAGVGKT----SLFYRLKENHFTPGRRNTIGIDSCSKFVKIGEKQVTL 62
Query: 323 TICDTVG 343
++ DT G
Sbjct: 63 SVWDTAG 69
>SB_29238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +2
Query: 227 NVESSPSPHNLPTVKLKA-HTYELEESNVRLKLTICDTVGYGDQVNKEDSFKAVVDYIDA 403
N ES P L TV++K T +LE V + + + + ++ A+ + I A
Sbjct: 6 NAESYDRPLTLVTVRIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYWALAECILA 65
Query: 404 QFEAYLQEELKIKRSLSSYHDSRLHVCLYFICPTGH 511
Y+ + + L + RLH C+ IC TG+
Sbjct: 66 Y---YVGTDEGVSEVLHVAGEKRLHRCVSRICDTGY 98
>SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 152 FVFNILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKL 322
++F I+ IG++G+GKS L+ S + N S + V+L E+E VR ++
Sbjct: 17 YLFKIVLIGDSGVGKSNLL-SRYTKNEFHLGSKATI-GVELAHRNVEIEGKTVRAQI 71
>SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4)
Length = 354
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 110 SLPDQLVSKSIQNGFV-FNILCIGETGLGKSTLMDSLFNTNVESSPS-PHNLPTV 268
+LP ++ + F+ ++ C GE+G GK+TL S +TN + P H L T+
Sbjct: 13 TLPPLDYIQAYRRAFIAWSTTCRGESGTGKATL--STMSTNAQPPPPLGHKLRTI 65
>SB_58461| Best HMM Match : WH2 (HMM E-Value=0.63)
Length = 592
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 197 STLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVR 313
S MDS FNT VES N ++ + ++E ++
Sbjct: 197 SVEMDSSFNTEVESESKAENTQDIEADCESEDVESKEIK 235
>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 164 ILCIGETGLGKSTLMDSLFNTNVESSPSPHNLPTVKLKAHTYELEESNVRLKLTICDTVG 343
I+ IG+ GK++L SLF + PS + +++ T+E++ V + D +
Sbjct: 293 IMLIGQDRAGKTSLKKSLF--GIPFDPSEVSTEGIEVDPSTFEVDVEQVSRWQRLSDEIE 350
Query: 344 YGDQ 355
G Q
Sbjct: 351 PGSQ 354
>SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)
Length = 485
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 209 DSLFNTNVESSPSPHNLPTVKLKAHTYEL 295
D L TN + +P P +P LK ++EL
Sbjct: 171 DQLLVTNKKKAPGPDGIPNTILKTFSFEL 199
>SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 295
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 344 NRQCHRLLTSA*HCSPPAHKCEPST 270
N QC + ++A PP+H+C P T
Sbjct: 14 NHQCRPVTSAAQSPVPPSHQCRPMT 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,455,584
Number of Sequences: 59808
Number of extensions: 393360
Number of successful extensions: 1590
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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