Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K05
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   0.81 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   1.1  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.1  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   4.3  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   7.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    24   9.9  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
 Frame = +2

Query: 134 HFEAVRMSISAGN--VQDYSVWKTNHSSRVDYN-------KGAVKSIIDENEKHKYGVSY 286
           +++ +R +I+     + D   W T+  S +DY+       KG V  +    E     V+Y
Sbjct: 384 YYQTIRTAIALRKQAISDSDSWTTDSHSYLDYDLRHAVVRKGDVLGVYTNYESSSDNVTY 443

Query: 287 EIHPETDDG 313
           ++    DDG
Sbjct: 444 DVSSNFDDG 452


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 173 VQDYSVWKTNHSSRVDYNKGA-VKSIIDENEKHKYGVSYEIHPETDD 310
           VQD   + + +S  V+YN+ A  +S  +E E+  Y  + E+  E +D
Sbjct: 143 VQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPED 189


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = +3

Query: 105 RTSSLGLEHIISKPSGCQLVPATYKTTRYGKQIIRHASTTTKEP*KVLSTKTKNTNTESH 284
           + SS G +   SKP     + A    + YG Q    +S              KN N E++
Sbjct: 148 KQSSTGTQEESSKPEKSNKLLAKSTLSLYGNQAFNPSSVLPSNSSSTPKENKKNVNKETY 207

Query: 285 MRSTQKLTMVKIQFSSV 335
             +T + + +K    SV
Sbjct: 208 QPNTFRRSPLKNDTGSV 224


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 432 TVCESGPTYSNLSVSGKITFKS-NILSSDPSNTLHL 328
           T+   G  Y N+  S + T    N+L+SDP NT+++
Sbjct: 690 TISTWGSQYHNVMTSLQRTINLLNMLTSDPKNTVYV 725


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = -3

Query: 429 VCESGPTYSNLSVSGKITFKSN---ILSSD--PSNTLHL 328
           +C+   T+ ++S  G +TF  N   ++S D  PSN++ L
Sbjct: 591 ICDIRLTFQSMSAMGHLTFLDNRIAVVSCDYLPSNSVQL 629


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 453 TNLMVFSTVCESGPTYSNLSVSGKITFKSNILSSDPSN 340
           TN   F +VCE    Y NL    KI ++    S  P N
Sbjct: 135 TNPKTFVSVCEELAKYGNLKNRPKIVWEPTPESCLPEN 172


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 22  RLSGQMHRFWLFIFGLPFVAAAPXSLKXXPLVLA 123
           RLSG++   W      PF+  A  S    P+V A
Sbjct: 391 RLSGKLRIRWGLSSDYPFIQTASFSFLETPIVYA 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,816
Number of Sequences: 5004
Number of extensions: 34691
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)