Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_K05
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 36 0.016
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 1.4
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 27 5.6
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 27 7.4
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 27 7.4
02_04_0052 + 19271014-19271627,19272055-19272224,19272321-192725... 27 7.4
10_08_0245 + 16138402-16138548,16138648-16138701,16139106-161391... 27 9.8
10_02_0018 - 4264602-4264796,4265050-4265131,4265217-4265327,426... 27 9.8
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 35.9 bits (79), Expect = 0.016
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 174 YKTTRYGKQIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKLTMVKIQFSSVMYCLDL 353
Y+ + G R +S T +EP V +KT+ ++ SH RS + + + + LD
Sbjct: 139 YQEEQGGDDEWRGSSFTRREPSTVKKSKTERSSRRSHERS--RRGKIDLDAAEATVTLDY 196
Query: 354 KIICST*RLSCRKPTN-LNTSDLIH 425
KI +T + R P N ++ D +H
Sbjct: 197 KIFVATWNVGGRSPPNTMSLEDWLH 221
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 246 LSTKTKNTNTESHMRSTQKLTMVKIQFSSVMYCLDLKIICST*RLSCRKPTNLNTSDLIH 425
L + KN M+ T+ M+ +Q + + + +K +CS + + R+ L DL H
Sbjct: 1813 LVIRDKNPADSDSMKQTRFTEMLAVQIYRIAFLI-MKFLCSQAKEAVRRAEELEFLDLAH 1871
Query: 426 KP 431
P
Sbjct: 1872 FP 1873
>07_03_0923 -
22617627-22617860,22618486-22618542,22618612-22618768,
22618875-22619014,22619642-22619777,22619874-22620142,
22620272-22620492,22620648-22620707,22620859-22620915,
22621008-22621405,22621929-22622000,22622098-22622169,
22622246-22622317,22622574-22622645,22622738-22622867,
22623065-22623170
Length = 750
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 186 RYGKQIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKLTMVKIQFSSVMY 341
+ G+ I+ S + P K+ + K +N SH R QKL + S +Y
Sbjct: 282 KLGEPKIKEVSDIKEPPVKLKNNAGKASNVISHTREEQKLNVSTAAASDAVY 333
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 412 DVFKFVGFRQDNL*VEHIIFRSKQYITLENWIFTIVSFWVDL 287
D+FK V FR++N V+ + S+QY T+ + V+ W+ L
Sbjct: 176 DIFKVVSFRRENF-VDSMCTSSEQYDTI---VCLSVTKWIHL 213
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 2 LXWPLGRGFRDKCIGFGCSSSACPSWR 82
L P+ G R G GCSS P+WR
Sbjct: 267 LPTPIPAGCRHSVGGAGCSSFPSPAWR 293
>02_04_0052 +
19271014-19271627,19272055-19272224,19272321-19272550,
19272657-19272765,19272858-19272985,19273102-19273203,
19273285-19273566,19273660-19273769,19273851-19274145,
19274242-19274475,19274705-19274935,19275167-19275478
Length = 938
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 15 WGAAFGTNASVLVVH-LRPALRGGSAN 92
WGA G +V++ H LRPA RGG A+
Sbjct: 31 WGAV-GVGRAVVLAHPLRPAPRGGHAH 56
>10_08_0245 +
16138402-16138548,16138648-16138701,16139106-16139171,
16139427-16139483,16140490-16140610,16140704-16140744,
16140835-16140886,16141555-16141623,16141697-16141768,
16141890-16142045,16143067-16143284,16143359-16143398,
16143484-16143602,16143726-16143827,16144256-16144300,
16144890-16145030,16145172-16145267,16145415-16145516,
16145611-16145709
Length = 598
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 149 RMSISAGNVQDYSVWKTNHSSRVDYNKGAVKSIIDENEKH 268
R++++A N+Q+ +WK +D +G V S D N H
Sbjct: 65 RITMAAFNIQEALIWKEKIEMVIDQQQGVVAS--DGNLAH 102
>10_02_0018 -
4264602-4264796,4265050-4265131,4265217-4265327,
4265415-4265641
Length = 204
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 152 MSISAGNVQDYSVWKTNHSSRVDYNKGAVKSIIDENEK 265
M S V V +T H+ R+ N +K+ IDE +K
Sbjct: 1 MGASIAYVNPMMVCETTHTVRISENSTVLKNKIDEEKK 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,850
Number of Sequences: 37544
Number of extensions: 230320
Number of successful extensions: 542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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