Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_K05
(464 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40797-9|AAK95870.1| 349|Caenorhabditis elegans Hypothetical pr... 34 0.044
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 31 0.31
U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical pr... 27 5.0
AL034393-16|CAA22331.2| 286|Caenorhabditis elegans Hypothetical... 27 5.0
AC024821-4|AAF60787.1| 300|Caenorhabditis elegans Hypothetical ... 27 5.0
Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical p... 27 8.8
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 27 8.8
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 27 8.8
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 27 8.8
U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF078785-8|AAC27095.1| 658|Caenorhabditis elegans Hypothetical ... 27 8.8
AC024804-5|AAF60747.2| 143|Caenorhabditis elegans Hypothetical ... 27 8.8
AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical ... 27 8.8
>U40797-9|AAK95870.1| 349|Caenorhabditis elegans Hypothetical
protein C28C12.12 protein.
Length = 349
Score = 34.3 bits (75), Expect = 0.044
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +2
Query: 182 YSVWKTNHSSRVDYNKGAVKSIIDENEKHKYGVSY-EIHPET-DDGEDPIFKCNVLLGSE 355
Y + RV+Y + K ++D KH V Y ++ ++ +D P+ C+
Sbjct: 147 YELMPNEERDRVEYQRKKTKKLVDGLLKHTAKVFYVDVEKKSKEDPSPPLVTCSTFAQLL 206
Query: 356 DNMFDLKVILPETDKFEY----VGPDSQTVENTIKFV 454
+ M +L P+ D++++ DS+ E IKF+
Sbjct: 207 EIMAELVQEDPQNDEYDHRKHIANIDSEEFEKKIKFM 243
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 31.5 bits (68), Expect = 0.31
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 198 QIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKLT 308
++IR +TTTK+P STK T T + + +QK T
Sbjct: 371 EVIRQVTTTTKKPSTTTSTKKLTTTTTTTPKPSQKPT 407
>U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical
protein C06A5.6 protein.
Length = 691
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 230 GAVKSIIDENEKHKYGVSYEIHPETDDGEDPIFKCNVLLGSEDNM 364
G + + K K GV I+ + D G+ IF C +LG+ M
Sbjct: 232 GQINEFYKDKVKRKSGVHALIYKKDDRGDKLIFDCPSILGTSMTM 276
>Z36238-6|CAA85279.2| 337|Caenorhabditis elegans Hypothetical
protein R74.7 protein.
Length = 337
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 179 DYSVWKTNHSSRVDYNKGAVKSIIDENEKHKYGVSYEIHPETD 307
D S W + S +D + K IDE +K +Y + P TD
Sbjct: 236 DLSGWDSEKSYPLDIDACFPKGEIDEEQKKRYEFKDVVQPPTD 278
>Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical
protein F14D7.2 protein.
Length = 457
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 248 IDENEKHKYGVSYEIHPETDDGEDPIFKCNVLLGSEDNMFDL 373
+DE+ G S + + + +D +D IF V+ EDN+FDL
Sbjct: 416 VDEDAGDGQGSSDKNNKDDEDDDDSIFG-KVVKDYEDNLFDL 456
>AL034393-16|CAA22331.2| 286|Caenorhabditis elegans Hypothetical
protein Y18D10A.21 protein.
Length = 286
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 173 VQDYSVWKTNHSSRVDYNKGAVKSIIDENEKHKYG---VSYEIHPETDDGED 319
+ Y WK + S + +NK ++ I + +++ YG V + ETDD +D
Sbjct: 138 ISHYRSWKKDDSDKEWFNKINGRACIHKLDRNYYGHWEVKLAVEHETDDIKD 189
>AC024821-4|AAF60787.1| 300|Caenorhabditis elegans Hypothetical
protein Y55B1AR.3 protein.
Length = 300
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 90 WRCRHEGQAEDEQPKP 43
WRCR EG QP+P
Sbjct: 15 WRCRDEGATASSQPEP 30
>Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical
protein F44F4.13 protein.
Length = 334
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 285 YETPYLCFSFSSIILFT 235
Y TPY C + S+I+FT
Sbjct: 283 YTTPYACIAIPSLIIFT 299
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 132 IISKPSGCQLVPATYKTTRYGKQIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKL 305
++ P G + + ++R+ KQ +TTT +P +T T T S+ S+ +
Sbjct: 333 MMHSPGGHSMKSTEFSSSRHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTI 390
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 132 IISKPSGCQLVPATYKTTRYGKQIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKL 305
++ P G + + ++R+ KQ +TTT +P +T T T S+ S+ +
Sbjct: 667 MMHSPGGHSMKSTEFSSSRHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTI 724
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 132 IISKPSGCQLVPATYKTTRYGKQIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKL 305
++ P G + + ++R+ KQ +TTT +P +T T T S+ S+ +
Sbjct: 917 MMHSPGGHSMKSTEFSSSRHHKQETTTTTTTTPQPPVFQTTTYPTTKTTSYNYSSSTI 974
>U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical
protein F18E9.3 protein.
Length = 378
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 165 PATYKTTRYGKQIIRHASTTTKEP*KVLSTKTKNTNT 275
PAT+ TT +TTT E K+LST +T T
Sbjct: 149 PATHSTTERAVITTTVPTTTTTEKTKLLSTTPTSTTT 185
>AF078785-8|AAC27095.1| 658|Caenorhabditis elegans Hypothetical
protein C04E12.10 protein.
Length = 658
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 182 YSVWKTNHSSRVDYNKGAVKSIIDENEKHKY 274
YS K N SS V YN G ++ ++D+ Y
Sbjct: 500 YSHTKPNGSSYVPYNVGNIERVVDKRLNQVY 530
>AC024804-5|AAF60747.2| 143|Caenorhabditis elegans Hypothetical
protein Y51H7BR.4 protein.
Length = 143
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 358 IFRSKQYITLENWIFTIVSF 299
++ KQYI+ E WIF +SF
Sbjct: 39 VYEDKQYISFEWWIFCGLSF 58
>AC006604-1|AAF39751.1| 484|Caenorhabditis elegans Hypothetical
protein C07F11.2 protein.
Length = 484
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +2
Query: 299 ETDDGEDPIFKCNV-----LLGSEDNMFDLKVILPETDKFE 406
E DDGE+P F+C+ + N++ KV+LPE + E
Sbjct: 312 EEDDGEEPHFECDKSDKEHVHDMLANLYFNKVVLPEMEYVE 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,221,694
Number of Sequences: 27780
Number of extensions: 196998
Number of successful extensions: 616
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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