Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K04
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   225   7e-60
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   225   7e-60
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.7  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   8.3  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  225 bits (549), Expect = 7e-60
 Identities = 107/214 (50%), Positives = 140/214 (65%)
 Frame = +3

Query: 81  LKLCXTNNXSSRXQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 260
           +K   ++   SR Q K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ
Sbjct: 4   IKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQ 63

Query: 261 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 440
           +  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                     
Sbjct: 64  IVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVT 123

Query: 441 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPXY 620
                    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFP +
Sbjct: 124 EPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGF 183

Query: 621 DAXSKKFNAEVHRAHIFGLHVAEYMXSLEQDDED 722
           D  +++ + E  R +I+G HVAEYM  L  DDE+
Sbjct: 184 DIETEELDDETLRKYIYGGHVAEYMEMLIDDDEE 217


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  225 bits (549), Expect = 7e-60
 Identities = 107/214 (50%), Positives = 140/214 (65%)
 Frame = +3

Query: 81  LKLCXTNNXSSRXQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 260
           +K   ++   SR Q K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ
Sbjct: 4   IKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQ 63

Query: 261 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 440
           +  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                     
Sbjct: 64  IVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVT 123

Query: 441 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPXY 620
                    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFP +
Sbjct: 124 EPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGF 183

Query: 621 DAXSKKFNAEVHRAHIFGLHVAEYMXSLEQDDED 722
           D  +++ + E  R +I+G HVAEYM  L  DDE+
Sbjct: 184 DIETEELDDETLRKYIYGGHVAEYMEMLIDDDEE 217


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 402 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 310
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 579 GLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFG 674
           G NVP +  +F  Y+   KKF+A     H+FG
Sbjct: 141 GRNVPATAFQFVLYEQFKKKFSA---TDHVFG 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,775
Number of Sequences: 5004
Number of extensions: 52701
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)