Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K04
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             211   5e-55
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         153   2e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   2.9  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   2.9  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  211 bits (515), Expect = 5e-55
 Identities = 118/243 (48%), Positives = 144/243 (59%), Gaps = 37/243 (15%)
 Frame = +3

Query: 108 SSRXQVKFKRRREGKTDYYARKR------------------------LVVQDKNKYNTP- 212
           S R      RR +GKTDYYARKR                        ++ Q++NK   P 
Sbjct: 8   SYRVLALLSRRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPI 67

Query: 213 -----KYRLIVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNY 356
                KYR   R   NK          ++AY++++GD ++ +AY+HELP +GVKVGLTNY
Sbjct: 68  FGSTQKYRRNSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNY 127

Query: 357 AAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTT 536
           AAAY TG                          EYNVE VD  PGAFRC+LDVGLART+T
Sbjct: 128 AAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTST 187

Query: 537 GARVFGAMKGAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFGLHVAEYMXSLEQDD 716
           GARVFGA+KGAVDGGL +PHS+KRFP YD+ SK F+AEVHR HIFG HVAEYM SL ++D
Sbjct: 188 GARVFGALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEED 247

Query: 717 EDS 725
           E+S
Sbjct: 248 EES 250


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  153 bits (370), Expect = 2e-37
 Identities = 69/112 (61%), Positives = 80/112 (71%)
 Frame = +3

Query: 261 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 440
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG                     
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 441 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 596
                EYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61  EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 586 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 473
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 586 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 473
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 222 LIVRLSNKDVTCQVAYSRIEGD-HIVC 299
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 270 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 368
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,487,286
Number of Sequences: 59808
Number of extensions: 438000
Number of successful extensions: 1267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)