Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K02
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   3.9  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   5.1  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    26   6.7  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    26   6.7  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.7  
SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    26   6.7  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   8.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   8.9  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.9  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 344 DDVDVTPVPCNEFIQSSPRCICKDNYFRN 430
           DD D++P   + FIQS+P+   K N   N
Sbjct: 416 DDFDMSPFIDDSFIQSNPKISTKYNLVAN 444


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 272 DSLWLAHIARHPDSRAY--NLVYKRSPDYTGRGASKQLQRGCRLLDNSRWDSQLCRIRAF 99
           +SLW   +A+HP +  Y   +V    P+   +   K+L++        +W     R R +
Sbjct: 24  ESLWYETVAKHPPTFQYARRIVPLYDPNKV-KSRGKRLRKSMYQPQEIQWPEDKLRKRFY 82

Query: 98  RLHCTDL 78
           R H  +L
Sbjct: 83  RDHPWEL 89


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 290 RPNEVWSPSPPPCLQE 337
           RP  VW P+P  CL E
Sbjct: 156 RPKIVWEPTPESCLPE 171


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 356 VTPVPCNEFIQSSPRCICKDNYFRNDSGICVSAQECRDINERTKNREKR 502
           V P PC+E  Q +P  + +      + G+  +  +   +  R K REKR
Sbjct: 9   VWPFPCDEMNQKTPSTVEEIRIALQELGLSTNGNK-EKLKRRWKFREKR 56


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +2

Query: 506 IPECGYNEVLSDSKIVCPPQTCESIYTTYLCESRGD 613
           +P C    +     +   P+TC   Y T LC+   D
Sbjct: 391 VPNCVQTGITIGCTLFILPETCNHAYNTMLCKLTED 426


>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 654 LFLKYPDKQLHPTSSPLDSH 595
           L +K P+ Q H TSSP  +H
Sbjct: 118 LIVKKPETQAHATSSPAHAH 137


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -1

Query: 532 YFVITTFRYVTLLAILRTLIYVATFLSGNADSAIVPEVIIFADASRAALYKLVTRYRSNV 353
           Y  +  F Y++    L+ +    +FL GN     +P    F ++SRA+   ++ +Y+  V
Sbjct: 81  YAALPRFLYLSYCGKLKKM----SFLLGNTKEFAIPNNGYFVESSRAS---ILYQYQGGV 133

Query: 352 DIIAGFL*TGRW*RAP 305
            +I        + RAP
Sbjct: 134 QVIVSGHLRAHFFRAP 149


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 152 DSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVLTT 265
           D+++    +PP P   G   K + K  S DDE  VL T
Sbjct: 519 DAKSSKTNTPPSPLLVGTPSKESLKEASSDDELPVLAT 556


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 389 SSPRCICKD-NYFRNDSGICVSAQECRDINERTKNREKRDIPEC 517
           S P+ IC+     ++DS  C + Q+ + INE +K +     P C
Sbjct: 74  SDPKVICRTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,107
Number of Sequences: 5004
Number of extensions: 72082
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)