Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_K02
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    37   2e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    37   2e-04
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 512 ECGYNEVLSDSKIVCPPQTCESIYTTYLCESRGDEVGCNCLSGYLRNSSGICIPSEEC 685
           +C  NE+ S     C  + C ++    LC  +    GC C  GYLRN   +C+P  +C
Sbjct: 36  KCPSNEIFSRCDGRCQ-RFCPNVVPKPLC-IKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 296 NEVWSPSPPPCLQETCDDVDVTPVPCNEFIQSSPRCICKDNYFRNDSGICVSAQEC 463
           NE++S     C Q  C +V   P+ C +    +P C+C+  Y RN   +CV   +C
Sbjct: 40  NEIFSRCDGRC-QRFCPNVVPKPL-CIKIC--APGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 32.3 bits (70), Expect = 0.005
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +2

Query: 80  GPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVL 259
           G C +NE    C   C   +CP    + +  C     C PGCVC+  Y  L    + CV 
Sbjct: 35  GKCPSNEIFSRCDGRCQR-FCPNVVPKPL--CIKI--CAPGCVCRLGY--LRNKKKVCVP 87

Query: 260 TTDCPP 277
            + C P
Sbjct: 88  RSKCLP 93


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 512 ECGYNEVLSDSKIVCPPQTCESIYTTYLCESRGDEVGCNCLSGYLRNSSGICIPSEEC 685
           +C  NE+ S     C  + C ++    LC  +    GC C  GYLRN   +C+P  +C
Sbjct: 36  KCPSNEIFSRCDGRCQ-RFCPNVVPKPLC-IKICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 296 NEVWSPSPPPCLQETCDDVDVTPVPCNEFIQSSPRCICKDNYFRNDSGICVSAQEC 463
           NE++S     C Q  C +V   P+ C +    +P C+C+  Y RN   +CV   +C
Sbjct: 40  NEIFSRCDGRC-QRFCPNVVPKPL-CIKIC--APGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 30.7 bits (66), Expect = 0.015
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +2

Query: 80  GPCNANETLVSCKAGCPTDYCPTSDSRAVVACSPPYPCNPGCVCKPNYKLLSQDDERCVL 259
           G C +NE    C   C   +CP    + +  C     C PGCVC+  Y  L    + CV 
Sbjct: 35  GKCPSNEIFSRCDGRCQR-FCPNVVPKPL--CIKI--CAPGCVCRLGY--LRNKKKVCVP 87

Query: 260 TTDC 271
            + C
Sbjct: 88  RSKC 91


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 200 GCVCKPNYKLLSQDDERCVLTTDCP 274
           GC CKP Y+    + + C   T+CP
Sbjct: 246 GCHCKPGYQ-ADVEKQEC---TECP 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,070
Number of Sequences: 438
Number of extensions: 5460
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)