Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J19
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 51 1e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 2e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 39 7e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.001
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.003
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.005
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.005
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.012
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.015
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.020
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.047
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.047
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.11
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.33
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 29 0.44
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.44
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.76
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 28 1.0
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 28 1.0
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 2.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 3.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 4.1
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 4.1
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 26 5.4
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 7.1
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 7.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 9.4
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.4
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
I + LT NVT++HI EIF YG + I P+ + N +GY Y+E+ D+A NA+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELN-KGYCYIEYVYHDQAANAVDK 159
Query: 628 MDGGQI 645
M+ ++
Sbjct: 160 MNNAEL 165
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/63 (28%), Positives = 38/63 (60%)
Frame = +1
Query: 445 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 624
R+ + LT + D + +F +G ++ + P+D+ +N +G+AY++F++AD+A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK-KTNNPKGFAYIDFHDADDAVRAYL 382
Query: 625 HMD 633
+D
Sbjct: 383 ELD 385
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 442 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 621
T+I I L T+ + + YG ++S+ P + + RG+A+ EF A EA NAM
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP--KKFDRSARGFAFAEFVTAREAANAM 778
Query: 622 K 624
+
Sbjct: 779 R 779
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 445 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHN---GRGYAYVEFNNADEAXN 615
R+ +GRL+ + + I +F T GTV+ + P R+ G A+V FNN ++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 616 AMKHMDG 636
A++ ++G
Sbjct: 105 AIETLNG 111
Score = 35.1 bits (77), Expect = 0.009
Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Frame = +1
Query: 235 RPKKKTISPN-KSPLKDRRDADREKIRDRSPTGDKKKSVLPLSNDKAKIKEKQXXXXXXX 411
+ +KK+ + N + P + E + S + + P SN+ + +KQ
Sbjct: 133 KDRKKSKNKNGEEPETSTSVENAESAKGSSDENEANTATAPSSNEANGVDKKQNEIKGKG 192
Query: 412 XXXXXXXXXX--TRIHIGRLTLNVTRDHIHEIFSTYG------TVKSIE-FPMDRL---- 552
I++ L++ +T + + E+F Y V+S+ + + R+
Sbjct: 193 GSGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRG 252
Query: 553 HPHNGRGYAYVEFNNADEAXNAMKHMDGGQI 645
GRG+ +V F NA++ A++ M+G Q+
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQV 283
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
+H+G L +VT ++ F +G + S+ + R R YA+VEF+ ++A AM++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVA--LHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 628 MD 633
M+
Sbjct: 66 MN 67
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
+++G L +VT + E+F++ G V SI D + GYAYV F+N ++ A+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV-TRRSLGYAYVNFHNMEDGEKALDE 140
Query: 628 MD 633
++
Sbjct: 141 LN 142
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +1
Query: 445 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 624
R+ + + N+T + + IF +G ++ + D + +G+ Y+++ N A NA++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD--DQNRSKGFGYIQYRNPISARNALE 398
Query: 625 HMDG 636
M+G
Sbjct: 399 KMNG 402
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 445 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 624
+I+I L LN+ D + E+ +G + S + + + + +G+ + EF N +A A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQL-IKNIADGSSKGFCFCEFKNPSDAEVAIS 369
Query: 625 HMDG 636
+DG
Sbjct: 370 GLDG 373
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.7 bits (81), Expect = 0.003
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 5/144 (3%)
Frame = +1
Query: 229 RSRPKKKTISPNKSPLKDRRDADREKIRDRSPTGDKKKSVLPLSNDKAKIKEKQXXXXXX 408
++ KK+ S + S + D+ E D + D + K K +
Sbjct: 193 KTEEKKEGSSESSSDSESSSDSSSES-GDSDSSSDSESESSSEDEKKRKAEPASEERPAK 251
Query: 409 XXXXXXXXXXXTRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE 588
+ +GRL+ NV + + F YGT+ MD +GY YV+
Sbjct: 252 ITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG-QSGRSKGYGYVD 310
Query: 589 FN-----NADEAXNAMKHMDGGQI 645
F A A N K +DG +
Sbjct: 311 FETPEAAKAAVAANGTKEIDGRMV 334
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 621
+++G + +VT + + F++ G+V + D+ H +G+AY+EF+ NA+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHP-KGFAYIEFSEPSLVPNAL 113
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 490 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 624
I ++FS YG V + FP L + R + YV+ DEA NA++
Sbjct: 682 ITKLFSAYGNVVDVRFPS--LRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
+++G L+ T + I+ +FS G ++ I +DR G+ +VE+ +A +++K+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF-TKTPCGFCFVEYFENQDALDSLKY 92
Query: 628 M 630
+
Sbjct: 93 I 93
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.015
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG--RGYAYVEFNNADEAXNAM 621
+++G + + + + +IF G VKS + +D P +G +GY + E+++ A +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID---PESGQPKGYGFCEYHDPATAASAV 63
Query: 622 KHMD 633
++++
Sbjct: 64 RNLN 67
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.9 bits (74), Expect = 0.020
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 451 HIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 621
H+G L+ ++T + + + F V SI +D L RG+ YVEF AD A+
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPL-TERSRGFGYVEFETADTLSAAL 150
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 220 NNGRSRPKKKTISPNKSPLKDRRDADREKIRD-RSPTGDKKKS 345
N R R + S +K+ D+ DA EK+ D R G+KK S
Sbjct: 306 NANRERSTSRKPSADKAEKTDKTDAIAEKVSDIRLGDGEKKSS 348
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.047
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
+ + + + D + +IFS +GTV + + + RG+ ++ F+ +EA +A+ +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV-TKASRGFGFLSFSTVEEATSAIDN 161
Query: 628 MD 633
++
Sbjct: 162 LN 163
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.047
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 442 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 621
T + +G L VT I ++++T G ++ +R N GY +VEF + EA +AM
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNA-GYCFVEFASPHEASSAM 151
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
+ +G L+ V+ + + +F +G + ++ P G+G +V+F N A A+
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP-------GKGCGFVQFVNRQSAEIAINQ 357
Query: 628 MDG 636
+ G
Sbjct: 358 LQG 360
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE-------FPMDRLHPH----NGRGYAYVEFN 594
I++G + ++ + I + FS YG V+SI +P ++ P NG Y +V+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 595 NADEAXNAMKHMDG 636
NA+ +K G
Sbjct: 79 NAESIEEVLKDAKG 92
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 621
+++ L + + IH +FS YG VK I L P N +Y ++A A +A+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM----LSPDNSAIVSYESLSSAIVARDAL 55
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 226 GRSRPKKKTISPNKSPLKDRRDADREKIRDRSPTGDKKKSVLPLSNDKAKIKE 384
G+S+P KK++ K + A +S KK S P + A IKE
Sbjct: 167 GKSKPSKKSVKAKKKLRLAEKPASNNSKAGKSSQESKKSSKAPAESAAAVIKE 219
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/63 (19%), Positives = 31/63 (49%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
+ + L+ + + + ++F +G ++ + D+ +G+A+V + + D A A
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK-ETGRAKGFAFVSYYDRDCAIKARDR 262
Query: 628 MDG 636
+DG
Sbjct: 263 LDG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
I+IG L ++ D I +FS +G I D+ +G+A++++ + A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK-ETGKSKGFAFLKYEDQRSTVLAVDN 91
Query: 628 M 630
M
Sbjct: 92 M 92
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 319 SPTGDKKKSVLPLSNDKAKIKEKQ 390
SP+ D KK L L ND +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 460 RLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 624
++ N R ++ +FSTYGTV I L RG A+V F + A AMK
Sbjct: 14 KINKNDLRTALYMLFSTYGTVVDIV----ALKTPKMRGQAHVVFFDPSAAAIAMK 64
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 442 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 621
TR+ +GR+ TR+ + + F YG + + G+ +VE +A +A + +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM---------NGFGFVEVEDARDARDIV 54
Query: 622 KHMDG 636
G
Sbjct: 55 NDFQG 59
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 241 KKKTISPNKSPLKDRRDADREKIRDRSPTGDKK 339
KKK ++ N+ K+RR +RE +SP G +K
Sbjct: 1015 KKKKLTRNEIKAKERRARERELAWLQSPKGTEK 1047
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 448 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 627
I++G L + + + + +FST K + F P +VEF N A A+K+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGP-----MCFVEFENIPYAMEALKN 482
Query: 628 MDG 636
+ G
Sbjct: 483 LQG 485
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 235 RPKKKTISPNKSPLKDRRDADREKIRDRSPTGDKKKSVLPLSNDKAKIKEK 387
R +KK+ +K KD+ AD+++I + DKKKS K+K KE+
Sbjct: 70 RKEKKSKHEHKKHKKDKPSADKDRISKK----DKKKS----KKGKSKTKEE 112
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 311 EIDHQQETKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQL 445
EI+HQ+ K ++LR NDL+ + S++A+ +L
Sbjct: 48 EIEHQKFVLKKHLEALPDALVRLRNATNDLESISSDSAYEGTPEL 92
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 223 NGRSRPKKKTISPNKSPLKDRRDADREKIRDRSPTGDKKKSVLPLSNDKAKIK 381
NG+++PKK+T + +S + + A + + R+P+ +S S+ KI+
Sbjct: 1216 NGKTQPKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIE 1268
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 277 KDRRDADREKIRDRSPTGDKKKSVLPLSNDK 369
K RR A+REK+R G K K L + K
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQK 509
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 496 EIFSTYGTVKSIEFPMDRLHPHNGR----GYAYVEFNNADEAXNAMKHMDGGQI 645
++ + G VK F M NG+ G + +F N D A ++ +DG QI
Sbjct: 64 KVLAKIGKVKENGFYMP-FEEKNGKKMSLGLVFADFENVDGADLCVQELDGKQI 116
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 338 KNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 463
KNL + + +K + KN N+L++V+ E + L STL +
Sbjct: 469 KNLDFSHTASKAETYKNSNELENVKREQP--FSELLPSTLQE 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,841
Number of Sequences: 5004
Number of extensions: 35971
Number of successful extensions: 119
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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