Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J18
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    27   2.0  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   4.7  

>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 20  CSDSTPSXXIFXYITVLICACLAYVSALPSAIAGAEDLQPAES 148
           C ++     IF Y+  L    L ++  LP+     E+ QP +S
Sbjct: 293 CENAAACERIFEYVFYLSSWSLVFLLTLPATTINRENFQPLKS 335


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 97  GDICEARTDQNSDIXENVXTWSAV 26
           GDICE  T    D+ E    WSAV
Sbjct: 136 GDICEFNTLLGEDVVELREGWSAV 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,826
Number of Sequences: 5004
Number of extensions: 26520
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)