Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J14
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.9  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 584 SKFDLFVPYLKTFNSDSFDY----ESLAKADYVFMRWKEHFLVPDHT 712
           S+  + +P+ +TF +   +     E LA+ ++    W +H L+P  T
Sbjct: 546 SQSSVTIPFERTFRNLDLNRPQGGEELAQFNFCGCGWPQHMLIPKGT 592


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 182 TTVCHGTYSSLSSATVTFTRARSSSYGKIMPVKVDITPPPPANS 313
           T+  + TYSS S  T   +   ++SYG  +      + PP  NS
Sbjct: 89  TSTSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQPPTDNS 132


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 248  SSSYGKIMPVKVDITPPPPANSKQPGVTKS 337
            SSS  + +P+K     PPP+ S  PG T S
Sbjct: 1097 SSSSSEGVPLKGTAV-PPPSGSSGPGSTGS 1125


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 13  RNFICGVCFLTFTKS 57
           R FIC  C   FTKS
Sbjct: 78  RQFICKYCNRQFTKS 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,568
Number of Sequences: 336
Number of extensions: 3349
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)