Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J14
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical
           protein T05F1.2 protein.
          Length = 579

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 248 SSSYGKIMPVKVDITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNS 391
           SS YG  +P     TPP  +N ++ GVT +   + +   G Q SK NS
Sbjct: 461 SSGYGSSLPGSGPSTPPSESNIEEAGVTPTNAESKNMSSG-QHSKQNS 507


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 182 TTVCHGTYSSLSSATVTFTRARSSSYGKIMPVKVDITPPPP 304
           T+    T ++ ++ T T T   +++   ++ VK+  TPPPP
Sbjct: 296 TSTISTTSTTTTTPTTTTTTTSTTTSDDLLWVKITTTPPPP 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,045
Number of Sequences: 27780
Number of extensions: 306749
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)