Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J13
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   114   1e-26

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  114 bits (274), Expect = 1e-26
 Identities = 51/97 (52%), Positives = 66/97 (68%)
 Frame = +2

Query: 473 FFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXX 652
           F+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F          
Sbjct: 226 FYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAML 284

Query: 653 XXXXXXFIV*AHHIFTVGIDIDTRAYXTSATIIIAVP 763
                  +V +HH+FTVG+D+DTRAY ++AT++IA+P
Sbjct: 285 SIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIP 321



 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 47/125 (37%), Positives = 59/125 (47%)
 Frame = +1

Query: 103 RINXXSFXXXXXXXXXXXXXXXVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 282
           R+N  +F                E G G G TVYPPLSS  +H G ++DLAI SL L GI
Sbjct: 103 RVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGI 162

Query: 283 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 462
           SS                   S  Q+PLF  A+ IT+          AG + +L +DRNL
Sbjct: 163 SSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNL 222

Query: 463 NTSFF 477
           NTSF+
Sbjct: 223 NTSFY 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,262
Number of Sequences: 5004
Number of extensions: 35936
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)