Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J13
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    31   0.76 
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    29   5.3  
08_02_1243 - 25527523-25527960,25527993-25528604                       28   7.1  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    28   7.1  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    28   7.1  

>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 433 ITILLTDRNLNTSFF*SCWRRRPNFISTFILIFWTS*SLYFNFTRI 570
           IT++L    L +     CWRR P     F+L F +  +LYF+ + I
Sbjct: 427 ITVMLVTTCLTSLVIMLCWRRPPVLALCFLLFFGSVEALYFSASLI 472


>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 429 SYYNIINRSKLKYIIFLILLEEETQFY 509
           SY NI N+  +KY + L+L++EE + Y
Sbjct: 262 SYRNINNKFSVKYYLNLVLVDEEDRRY 288


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 601 KRKKRNFWLFRNNLCYTSNWVIRIHCLS 684
           +R+ R FWLFR   C+   +  RI CLS
Sbjct: 19  RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 568 IWYNFSYYFTRKRKKRNFWLFRNN 639
           IW  F+   T K K+ +FW+F+ +
Sbjct: 55  IWPKFAVALTNKEKEEDFWVFKGS 78


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 545 LQDVQKIKINVDIKLGLLLQQDQKN-DVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHT 369
           + D +  K+ VD+ L LL    + N D      V+ +  +   T  +N+ KN V  +AH+
Sbjct: 442 MADERPKKLLVDV-LALLADASKSNADTNLSSEVDKLSKSCNPTDQNNDEKNDVT-SAHS 499

Query: 368 NKGN*SNDILFNR 330
            K N  NDI  NR
Sbjct: 500 PKDNMDNDIDDNR 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,429
Number of Sequences: 37544
Number of extensions: 230902
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)