Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J12
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.0  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 208 KDFLIRFFSNF*CIFSHFTLGR 143
           K F+I FF  F  IFS F  G+
Sbjct: 2   KTFVILFFGVFFIIFSDFVNGK 23


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 522 VRSARWMRISCSSMY 478
           V +  WM +SCSS +
Sbjct: 405 VNAGMWMWLSCSSFF 419


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 470 INKYIEEHDIRIQRADRTMP 529
           +N+YIEE   + + A+  MP
Sbjct: 192 LNRYIEESISKYKHAELVMP 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,242
Number of Sequences: 336
Number of extensions: 3108
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)