Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J12
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 77 2e-15
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 31 0.12
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.46
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 1.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.4
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 28 1.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.9
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 27 3.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.3
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.6
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 7.6
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 10.0
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 10.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 10.0
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 25 10.0
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 10.0
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/99 (36%), Positives = 62/99 (62%)
Frame = +2
Query: 215 FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 394
+ + ++ +Q+ KI +L+ + +EHK+V++TL ++ R+CFRM GVLVERTV V+P
Sbjct: 15 YNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPI 74
Query: 395 LISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 511
L + E + A+ L DQ Q E K+ +++ I++ R
Sbjct: 75 LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQVVR 113
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 31.5 bits (68), Expect = 0.12
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +2
Query: 275 ELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVA-EVLPELISNYE-----QLPKAIQS 436
E+NE I+ E + L K + + G L ER VA E I +E ++ + S
Sbjct: 379 EINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRARIEGIKAHEMFLNNRVSEINSS 438
Query: 437 LEDQLTQKGEEINKYIEEHDIRIQRADRT 523
LE QLT + E +++ +++QR D T
Sbjct: 439 LEKQLTTQKELRSRFEILFPVKLQREDFT 467
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +2
Query: 224 LRNEQRQLGSKISELQMELNE----HKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLP 391
L N +++L K+++L ++NE K + ++ +L +K ++ + + A L
Sbjct: 856 LANNEQKL--KLTKLNFQVNELEQLEKDINKSSEDCDLQKK--KLLEVSSKQGSQAPFLN 911
Query: 392 ELISNYEQLPKAIQSLEDQLTQKGEEINKYIEE 490
EL S YE+L IQ + + + E N+Y+ +
Sbjct: 912 ELESEYEKLEADIQEMAQKSRTEILEANEYLHQ 944
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.5 bits (63), Expect = 0.46
Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Frame = +2
Query: 194 NEEIFAGFQTLRNEQRQLGSKISELQMELNEHKI--VIETLRGVE--LTRKCFRMFGGVL 361
NE + +TL+++ ++G ++ + + K+ + E L+ V+ L + F+
Sbjct: 912 NEGLVTEIKTLQDKIMEIGG----IRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQ 967
Query: 362 VERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRADRTM 526
++ L L S Y+ ++I +L+ +L + +NKY++EH R++ + +
Sbjct: 968 RSQSFQVELSNLTSEYDTTTESIATLKTEL----QSLNKYVDEHKSRLREFENAL 1018
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/96 (27%), Positives = 45/96 (46%)
Frame = +2
Query: 242 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 421
+L +KI+E + NEHK + +RG GG L E+ AE+ EL N
Sbjct: 20 ELDAKINEAKKRFNEHKEKLGAIRG-----------GGSLQEKN-AELRAEL-DNIRNAQ 66
Query: 422 KAIQSLEDQLTQKGEEINKYIEEHDIRIQRADRTMP 529
AI+S + L K + ++ +++ + +T+P
Sbjct: 67 AAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVP 102
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 374 VAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHD 496
+++ L E+ S Y + +LEDQL + INK+ E D
Sbjct: 734 ISKRLQEIESLYRDRELLVTNLEDQLVDQTVTINKFAFERD 774
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 191 TNEEIFAGFQ---TLRNEQ-RQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGV 358
T +EI F+ T R Q L SKI E + +LN K+ ETLR E T+ + G +
Sbjct: 60 TAKEIIDAFERDSTQRTLQIESLESKIGEQERDLNNEKLASETLR--EKTQLLEKENGAL 117
Query: 359 LVE 367
VE
Sbjct: 118 KVE 120
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 308 KSQLRSYVRLTPFVILIFYSLIDVVHYEEFGNQQRFP 198
K+ R+Y+R P + IF + +V GN Q FP
Sbjct: 223 KNYFRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFP 259
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 224 LRNEQRQLGSKISELQMELNEHKIVIETL 310
L+N+ + +++ ELQ +LN+ K IETL
Sbjct: 804 LKNKLSEESTRLQELQSQLNQDKNQIETL 832
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 501 ASNVLIAPCLNHLQSNPPLPSLMC*LLAVNYTDPFISYSCRSVLTV 638
A N+ IA +N + N P + + L VN +P +SY +L +
Sbjct: 25 ALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSYLALHLLDI 70
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 534 HLQSNPPLPSLMC*LLAVNYTDPFIS--YSCRSVLTVRLXL 650
HL SN LP +C LLA D F S Y VL RL L
Sbjct: 100 HLMSNYNLPETLCFLLAGFVGDLFASVVYVPSEVLKTRLQL 140
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 161 AKNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKI 295
+K + K+T E + + L E+ +L S +S+LQ LN+ ++
Sbjct: 757 SKGEKDLRKRTQERLISENDKLLAERERLMSLVSDLQTFLNQQQL 801
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 218 QTLRNEQRQLGSKISELQMELNEHKIVIETLR 313
+ L+NE+R+L K++E + L+ ++ TLR
Sbjct: 644 ENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 387 NTSATVRSTSTPPNIRKHLRVNSTP 313
+T +V++TSTP N+R +N P
Sbjct: 567 STVESVKATSTPLNVRPKYNINYPP 591
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 221 TLRNEQRQLGSKISELQMELNEHKIVIE 304
TLR RQLGS + EL+ + H+ E
Sbjct: 330 TLRKVTRQLGSLLHELECFIQHHEYTKE 357
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 344 SGNTYGSTPLPAKSQLRSYVRLTPFVILIFY 252
S TY ++ LPA QL S++ + +F+
Sbjct: 169 SNTTYTNSDLPASKQLESFISMNLSYSKVFF 199
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 392 ELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRAD 517
EL +NY+ A+Q L+ +L +E+++ I +++ R++
Sbjct: 504 ELSNNYDLQGAAVQYLQRRLRMVEDELHEAINSKNVQQSRSE 545
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 155 KMAKNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEH 289
K ++ S++ K NE++ + LR+ + SKI LQ E NE+
Sbjct: 684 KQNESASELLKSRNEKLCVDYDKLRSVFEEDSSKILSLQKE-NEN 727
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 260 SELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERT 373
++L+ L + + I ++GV +T+ R+F ++ E T
Sbjct: 129 NQLKGCLKKDAVAISCIKGVSVTKDRVRLFSDIIEENT 166
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 464 EEINKYIEEHDIRIQRADRTMPEPPPE-QSTSTKSNVLVAS 583
EE+ K IEE +Q + E P + +ST+ N+ S
Sbjct: 317 EEVEKAIEEETKSVQANEENETEKPSQTESTTNNDNIKAPS 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,867
Number of Sequences: 5004
Number of extensions: 50015
Number of successful extensions: 189
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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