Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J12
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0122 + 20333025-20333468 102 3e-22
12_02_0365 + 18045340-18045783 98 6e-21
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 31 1.1
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 30 1.5
09_06_0287 + 22047404-22048409,22048754-22049967 29 3.4
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 5.9
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 5.9
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 28 5.9
09_03_0027 - 11690348-11690828,11694815-11695749 28 7.8
>11_06_0122 + 20333025-20333468
Length = 147
Score = 102 bits (244), Expect = 3e-22
Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 2/142 (1%)
Frame = +2
Query: 158 MAKNTSKVGKKT-NEEIFAG-FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTR 331
MA GK+ NE+I A + +R+E QL +KI+EL+ME++EH +VI + ++ +R
Sbjct: 1 MASKAGGDGKEAINEQIIANTYGNMRSEMTQLYTKITELEMEVSEHSLVIGAIEPLDHSR 60
Query: 332 KCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 511
+C+RM GGVLVERT+ EVLP + N E L + I + + L +K +EI ++ ++ IRI++
Sbjct: 61 RCYRMVGGVLVERTIREVLPAVHRNKEGLEEVIARMHEALEKKKKEITEFELKYKIRIRK 120
Query: 512 ADRTMPEPPPEQSTSTKSNVLV 577
AD E + + VLV
Sbjct: 121 ADSNADEEEGSKKEGSAQGVLV 142
>12_02_0365 + 18045340-18045783
Length = 147
Score = 97.9 bits (233), Expect = 6e-21
Identities = 51/127 (40%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
Frame = +2
Query: 158 MAKNTSKVGKKT-NEEIFAG-FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTR 331
MA S K+ NE++ A + +R+E QL SKI+EL+ME++EH +VI + ++ +R
Sbjct: 1 MAGQPSGADKEVINEQMVANMYANMRSEMNQLYSKITELEMEVSEHSLVIGAIEPLDPSR 60
Query: 332 KCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 511
+C+RM GGVLVERT+ EVLP + N E L + + + + L +K +EI ++ ++ IRI++
Sbjct: 61 RCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARMNEALEKKKKEITEFELKYKIRIRK 120
Query: 512 ADRTMPE 532
AD E
Sbjct: 121 ADSDTQE 127
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = +2
Query: 230 NEQRQLGSKISELQMELNEHKIVIETLR-GVELTRKCFRMFGGVLVERTVAEVLPELISN 406
++ R+L +EL+ +L EH + IETLR ++++ L E T + + + +
Sbjct: 214 DDVRRLEKSNAELREQLEEHVVTIETLRTQIKISEAQHEKELKELKEITSSTYVDQ-AKS 272
Query: 407 YEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRADRTMPEPPPEQSTSTKSNV 571
+Q + Q D L+ E+ I++ D R+ ++ E E S KSN+
Sbjct: 273 LQQTLEYKQKQIDSLSTSNTELQNSIKDLDERLSAYKQSRAE-ADEIIQSQKSNI 326
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 176 KVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLRG-VELTRK 334
KV + EEI + +QR+ IS+LQ E ++++ETLR +E TR+
Sbjct: 357 KVNAEAQEEIKRQAEAHLRQQREQKEVISKLQESEKEIRLLVETLRSKLEDTRE 410
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 167 NTSKVGKKTNEEIFAGFQTLRNEQRQLGSKIS-ELQME-LNEHKIVIETLRGVELTRKCF 340
N+ ++ K N+ F+G Q R+LG+ + ++ ++ LN + L ++ K
Sbjct: 217 NSKQIKAKVNKYAFSGGQDTVELHRELGANLDVDVSIKYLNFFLQDDDELEHIKKEYKAG 276
Query: 341 RMFGGVLVERTVAEVLPELISNYEQ 415
RM G + +R + EVL EL++ +++
Sbjct: 277 RMLTGEVKQRLI-EVLSELVARHQR 300
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 485 EEHDIRIQRADRTMPEPPPEQSTSTKSNVLVA 580
+ + +R++R + + P+PPP Q + VL+A
Sbjct: 207 DSYQVRLRRLNPSPPQPPPPQGAGDPTVVLIA 238
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +2
Query: 164 KNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIET------LRGVEL 325
+NTS+ K T ++ + + +Q+Q +KISEL+++L++ ++ ++ L +E+
Sbjct: 554 ENTSRELKSTILDLNSEKDAVLLQQQQSLAKISELELQLSKTQLELKNSEQKMQLLELEI 613
Query: 326 TRKCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINK 478
T+K M ++ L + Q ++ S+E +Q EE+N+
Sbjct: 614 TQKSESM-------DSLTLSLKDETEKRVQAETSLMSMESMYSQSQEEVNR 657
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.3 bits (60), Expect = 5.9
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Frame = +2
Query: 194 NEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLR--GVELTRKCFRMFGGVLVE 367
NEE G + + + Q+QLG I + ++ L+ + IE L+ L K M +L
Sbjct: 866 NEEKINGCKEVASMQQQLGLSIKDQEL-LHSNLAQIEELKRENTLLKGKNAEMEQELLKA 924
Query: 368 RTVA----EVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQ-RADRTMPE 532
+ + + L + NY L +++LED+++ +E N + + + + R RTM
Sbjct: 925 QKCSHDNMDKLHGVERNYLHLRDNLKNLEDKISNLEDE-NHLLRQKALSLSPRHSRTMSH 983
Query: 533 PPPEQSTSTKS 565
P S KS
Sbjct: 984 PIGSSPCSPKS 994
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 242 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 421
+L K+ E++MEL + VIE L LT K + G + R +A + +++ Y
Sbjct: 40 ELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIK--GWIAEVRKLAYHVEDVMDKYSY-- 95
Query: 422 KAIQSLEDQLTQK 460
A+Q E+ +K
Sbjct: 96 HALQMEEEGFLKK 108
>09_03_0027 - 11690348-11690828,11694815-11695749
Length = 471
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 585 PLATSTLDLVEVDCSGGGSGMVRSARWMRISCSSMYLLI 469
P T T L + CS G G+ +AR +R+S Y L+
Sbjct: 163 PPGTRTYSLAGMGCSAGTVGIDMAARALRVSRRGGYALV 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,385
Number of Sequences: 37544
Number of extensions: 340851
Number of successful extensions: 1159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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