Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J09
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 28 1.3
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 2.2
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 2.9
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 26 3.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 3.8
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 3.8
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 26 5.1
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 5.1
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 6.7
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 8.9
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 25 8.9
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 428 ISNFVYSFFTPIFSCHVGFFIKWAIYMISLS 336
+ NF+ SFFTP S +GF + + I+++
Sbjct: 413 LGNFMVSFFTPFISNSIGFKLGYIYACINMT 443
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 537 RCRPSHRPPIKMNYIPIRFLWRVF*LD--ACFQFFLSS 430
R RPS +PP++ ++P ++ +F ACF L S
Sbjct: 61 RARPSQKPPLRSTHLPHLLIFALFVGKHIACFHHLLLS 98
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 428 ISNFVYSFFTPIFSCHVGFFIKWAIYMISL 339
+ NF+ SFFTP + +GF + + I+L
Sbjct: 413 LGNFMISFFTPFINNAIGFKLGYIYACINL 442
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 422 NFVYSFFTPIFSCHVGFFIKWAIYMISLSQLISY*TKLFS 303
NF+ SFFTP + +GF K+ S + S T LF+
Sbjct: 415 NFLISFFTPFITNSIGF--KYGYIFASCNLCASIVTFLFA 452
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 531 CIYCGYLY*ESTEGWAI-CXICHGWAHDSC 617
CI+C ES G I C ICH W H C
Sbjct: 1096 CIFCFCRLPES--GVMIECEICHEWYHAKC 1123
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 422 NFVYSFFTPIFSCHVGF 372
NF+ SFFTP S +GF
Sbjct: 417 NFMISFFTPFISNSIGF 433
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 422 NFVYSFFTPIFSCHVGF 372
NF+ SFFTP +GF
Sbjct: 419 NFLISFFTPFIQASIGF 435
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 135 PFATSCFAFRVANHWRWMH 79
PFA S F+F + W W H
Sbjct: 94 PFAASYFSFTMLYIWSWKH 112
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 296 PCFLHTYLV-VTGISVVIHSITSFSYTAAEHHM*QRLEEAPSCY*EPIRPR 147
P H ++V TG +HS+T + A H + +++ S + RPR
Sbjct: 798 PVVYHDFIVNETGTDAQVHSLTLEQFLGASHSPSEEIKDDASDIQQKRRPR 848
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -1
Query: 488 FDFFGESFSLMLVFSSFYLLISNFVYSFFTPIFSCHVGF 372
F SF F +L+ F+YS TP F H+ F
Sbjct: 271 FKALNASFDGSYKFPIPIVLLCFFLYSLLTPFFDIHLQF 309
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 8.9
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = -3
Query: 282 YLLSSYRNQCRHPQYH--ELFLHGGGTSYVAEARGSPILLLRT-HKTQNFRGPFATSCFA 112
YLL Y+ QC P YH L G + R P H Q+ P+ TS
Sbjct: 223 YLL--YKKQCERPSYHPWNLLSPGAYSIITGMLRSDPFKRYSVKHVVQH---PWLTSSTP 277
Query: 111 FRVAN 97
FR N
Sbjct: 278 FRTKN 282
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 422 NFVYSFFTPIFSCHVGF 372
NF+ SFFTP + +GF
Sbjct: 385 NFLISFFTPFITNSIGF 401
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,164
Number of Sequences: 5004
Number of extensions: 53910
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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