Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J09
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0015 + 22164889-22165000,22165135-22165167,22165992-221662... 34 0.11
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 32 0.43
03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311... 31 0.56
05_01_0459 - 3637741-3637995,3638078-3638204,3641273-3641495,364... 31 0.74
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 31 0.98
03_02_0009 + 4891545-4892147,4892757-4893308 30 1.3
01_06_0397 + 29017608-29018510,29018751-29019083 30 1.7
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 29 2.3
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 29 3.0
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077... 29 4.0
05_04_0060 + 17576427-17578781 28 5.2
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 5.2
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 28 6.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 6.9
05_03_0048 + 7796372-7796674,7796969-7797169 27 9.2
02_04_0103 - 19768288-19768737 27 9.2
>04_04_0015 +
22164889-22165000,22165135-22165167,22165992-22166220,
22166709-22166826,22166910-22167188
Length = 256
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +3
Query: 414 HKVGNKKIKR--TENKHQAKRLAKXXXXXXXXXXXXDGDWA---CIYCGYLY*ESTEGWA 578
+K G+K KR +++K Q + AK D D A C CG Y + E W
Sbjct: 159 NKSGSKPPKRPNSDSKPQKQVQAKYEEENGGRGNGGDEDQAETICGACGEAY-ANGEFWI 217
Query: 579 ICXICHGWAHDSC 617
C IC W H C
Sbjct: 218 CCDICETWFHGKC 230
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 519 GDWACIYCGYLY*ESTEGWAICXICHGWAHDSCAE 623
G+ C CG Y + E W C IC W H C +
Sbjct: 208 GETLCGACGESY-GADEFWICCDICEKWFHGKCVK 241
>03_06_0465 -
34130083-34130340,34130421-34130541,34131158-34131186,
34132259-34132382,34132594-34132816,34132948-34132980,
34133106-34133208
Length = 296
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 531 CIYCGYLY*ESTEGWAICXICHGWAHDSC 617
C CG LY + E W C IC W H C
Sbjct: 240 CGTCGGLY-NANEFWIGCDICERWFHGKC 267
>05_01_0459 -
3637741-3637995,3638078-3638204,3641273-3641495,
3641592-3641624,3641716-3641854
Length = 258
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 516 DGDWA---CIYCGYLY*ESTEGWAICXICHGWAHDSCAE 623
DGD + C CG +Y + E W C +C W H C +
Sbjct: 197 DGDHSETLCGTCGGIY-SADEFWIGCDVCERWYHGKCVK 234
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 516 DGDWACIYCGYLY*ESTEGWAICXICHGWAHDSC 617
D + C CG Y + E W C +C W H C
Sbjct: 152 DQAYMCGACGETY-ANGEFWICCDVCEKWFHGKC 184
>03_02_0009 + 4891545-4892147,4892757-4893308
Length = 384
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 48 FFSGFWXINCCASISNGSQL*TQNSSWQMGP*SSGSYGFLITGWGFLEPLLHMMF 212
+ +G + I ++ N S TQN+ WQ GP S+G+ G T ++ +L + F
Sbjct: 131 YTNGVYTIFATIALPNNST--TQNTVWQAGPGSTGNVGQHATSGPNVQSMLRLDF 183
>01_06_0397 + 29017608-29018510,29018751-29019083
Length = 411
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 147 SGSYGFLITGWGFLEPLLHMMFRRRVRKARDTVDDDTDSGNY*VGMQEARLTGK 308
SGS ++ G L P LH FR+ +++ R T D + D N +G Q R+ +
Sbjct: 89 SGSLSIIV---GQLLPFLHEPFRQVLKRLRWTADHEIDRVNLTLGRQLDRIVAE 139
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 466 KDSPKKSNRNIVHLNWRTVTGP 531
+DSP +S + + H NW+ + GP
Sbjct: 632 RDSPWESCKLVTHFNWKNIAGP 653
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 531 CIYCGYLY*ESTEGWAICXICHGWAHDSC 617
C CG Y + E W C IC W H C
Sbjct: 190 CGTCGGRY-NANEFWIGCDICERWFHGKC 217
>12_02_0683 +
22006770-22006935,22007030-22007274,22007524-22007727,
22007847-22007939,22008015-22008107,22008196-22008537,
22008675-22008737,22008812-22008892
Length = 428
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 354 DSPLNEETDMAGEDWRKKRIHKVGNKKIKRTENK 455
DS NEET + GE K++ K ++I+ ENK
Sbjct: 337 DSSSNEETHVRGEVGELKKLVKTLGQRIEELENK 370
>05_04_0060 + 17576427-17578781
Length = 784
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 261 NQCRHPQYHELFLHGGGTSYVAEARGSP 178
++ H ++HE FL GGG E R SP
Sbjct: 67 DEAAHRRWHESFLPGGGGGGGGEERASP 94
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 134 GPLKFWVLWVLNNR 175
GPL FW+LW +N R
Sbjct: 24 GPLSFWILWAVNWR 37
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 279 LLSSYRNQCRHPQYHELFLHGGGTS 205
L SSY + + PQ H L+ +GG S
Sbjct: 176 LSSSYASSSKFPQLHHLYFNGGSIS 200
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 516 DGDWAC-IYCGYLY*ESTEGWAICXICHGWAHDSCA 620
DG W CG Y + E C C+ W H CA
Sbjct: 244 DGSWTVDCSCGITY-DDGEEMVSCDECNVWVHTRCA 278
>05_03_0048 + 7796372-7796674,7796969-7797169
Length = 167
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 155 RPRTSG--AHLPRAVLRLELRTIGDGCTAVDXPKTGEKHLQKQ 33
RPR SG AH+P + LR R +D P G+K +++
Sbjct: 34 RPRPSGDPAHVPGSELRAGQRACAGTTRRLDEPAKGKKEKERK 76
>02_04_0103 - 19768288-19768737
Length = 149
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 342 RNHIDSPLNEETDMAGEDWRKKRIHKVGNKKIKRTENKHQAKRLAK 479
R ID P+ E+ + RKK+ K KK K+ + K + K+ K
Sbjct: 93 RGWIDGPMREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKK 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,671,556
Number of Sequences: 37544
Number of extensions: 353973
Number of successful extensions: 944
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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