Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J09
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M23078-1|AAA28125.1| 170|Caenorhabditis elegans protein ( C.ele... 30 1.5
Z49909-2|CAB60994.1| 375|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF058329-1|AAD20727.1| 375|Caenorhabditis elegans unknown protein. 29 2.7
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 28 4.7
U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine rece... 28 4.7
AF002197-2|AAB53983.2| 486|Caenorhabditis elegans Hypothetical ... 28 4.7
Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 28 6.2
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 27 8.2
U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain (pr... 27 8.2
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 27 8.2
AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine re... 27 8.2
>M23078-1|AAA28125.1| 170|Caenorhabditis elegans protein (
C.elegans dpy-20 to unc-22 region mRNA encoding a
conserved ORF, clone pCesC5.).
Length = 170
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -3
Query: 453 CFQFFLSSYFQLCVFVFYANLLLPCRFLH*V-GYLYDFAEPTDKLLNEVIFRLTLLPAYL 277
C F+ +S+ C + L+ +F H V GY+ F + + LL V+F L +LP
Sbjct: 57 CITFYQASFGFNCGGFYKGAALISRQFSHFVIGYIQLF-KSSATLLEPVLFSLLVLPG-S 114
Query: 276 LSSYRNQCRHPQYHELFLHGGGTSYVAEARGSP 178
S + + H L L T YV AR P
Sbjct: 115 EDSELSWTSYFLIHALTLTVANTVYVLLARSEP 147
>Z49909-2|CAB60994.1| 375|Caenorhabditis elegans Hypothetical
protein C14A4.2 protein.
Length = 375
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 321 IAYQLAQRNHIDSPLNEETDMAGE 392
+A QL RNH+ +PL+++ D GE
Sbjct: 43 VAKQLNMRNHLPAPLSKQMDTLGE 66
>AF058329-1|AAD20727.1| 375|Caenorhabditis elegans unknown protein.
Length = 375
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 321 IAYQLAQRNHIDSPLNEETDMAGE 392
+A QL RNH+ +PL+++ D GE
Sbjct: 43 VAKQLNMRNHLPAPLSKQMDTLGE 66
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 321 IAYQLAQRN-HIDSPLNEETDMAGEDWRKKRIHKVGNKKIKRTENKHQAKRLAK 479
+A + A++N + DS E+ + E+W ++++V NKK K NKH + K
Sbjct: 118 VAQKTAKKNLYADSREVEKDEETNENWDSDKLNEVVNKKNK---NKHMIDIVCK 168
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 339 QRNHIDSPLNEETDMAGEDWRKKRI--HKVGNKKIKRTENKHQAKR 470
+RNH D P + D G + R++R H + + T + H+ +R
Sbjct: 255 KRNHDDDPSDTTIDHTGHNHRRRRSEDHDPNDPNVDHTGHNHRRRR 300
>U97009-2|AAC69029.3| 342|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 33 protein.
Length = 342
Score = 28.3 bits (60), Expect = 4.7
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 21/101 (20%)
Frame = -1
Query: 482 FFGESFSLM-------LVFSSFYLLISNFVYSFF----------TPIFSCHVGFFIKWAI 354
FFGE FS M L +SF L+ + +Y +F T I C +G+F + I
Sbjct: 102 FFGEWFSYMSYVGILHLSLNSFISLMLSMIYRYFSIRFKRFTANTSIILCIIGYFFPFLI 161
Query: 353 YM----ISLSQLISY*TKLFSG*PCFLHTYLVVTGISVVIH 243
+ I++S +S+ T + G L +Y +V + H
Sbjct: 162 FASCSNIAISSSLSFNTAVLDGMVENLESYHMVLTTEISNH 202
>AF002197-2|AAB53983.2| 486|Caenorhabditis elegans Hypothetical
protein F20H11.1 protein.
Length = 486
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 531 CIYCGYLY*ESTEGWAICXICHGWAHDSCAE 623
C C + + W C +C AHD CAE
Sbjct: 176 CEVCMHTIWRLVQWWRRCRVCGMRAHDKCAE 206
>Z49967-7|CAA90257.1| 740|Caenorhabditis elegans Hypothetical
protein F54C9.9 protein.
Length = 740
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 363 LNEETDMAGEDW-RKKRIHKVGNKKIKRTENKHQAKRLAK 479
+N++ D ED +KK+ K G KK+K TE ++ + + +
Sbjct: 622 MNDQNDNTEEDAEKKKKKKKRGKKKVKLTETENPEENMTE 661
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 369 EETDMAGEDWRKKRIHKVGNKKIKRTENK 455
EE D G D +KR H+ GNK+ R K
Sbjct: 58 EEADETGGDSERKRRHRHGNKRGDRGSEK 86
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 201 VAEARGSPILLLRTHKTQNFRGPFATSCFAFRVAN 97
+ +A GSPI T KT++F+ P AT V N
Sbjct: 80 IGQAVGSPIFGTWTQKTESFKVPVATGLVFCCVGN 114
>U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 11 protein.
Length = 589
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 357 SPLNEETDMAGEDWRKKRIHKVGNKKIKRTENKHQAKRLAK 479
S L+EE GED ++R + NK + K +AKR+ K
Sbjct: 238 SYLDEEDKERGEDRYERREMEKQNKAERERRRKEEAKRIRK 278
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -3
Query: 162 THKTQNFRGPFATSCFAFRVAN--HWRWMHSS*XTKNRRKTLAKAXFC 25
T KT ++G TS + N W+W+ S T R L + FC
Sbjct: 42 TDKTNEYKGTCCTSEAVEELENSEEWKWLLKSEETTERWNGLTQFLFC 89
>AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine
receptor, class x protein5 protein.
Length = 306
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = -1
Query: 497 IFRFDFFGESFSLMLVFSSFYLLISNFVYSFFTPIFSCHVGFFIKWAIYMISLSQLISY 321
+FRF FFG+ S+ L+ +F+ +IS+ + F F H I + Y++S +++ S+
Sbjct: 29 VFRFAFFGKRSSIYLI--AFFNIISD-LQQLFVACF--HSSLSIIFGRYVLSGARINSF 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,786
Number of Sequences: 27780
Number of extensions: 308107
Number of successful extensions: 909
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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