Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J09
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.45 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.60 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 237 HELFLHGGGTSYVAEARGSPILLLRTHKTQNFRGPFATSCF 115
           HEL +HG     + E    P+L L+    Q F   +  S F
Sbjct: 95  HELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRF 135


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 466 KDSPKKSNRNIVHLNWRTVTGPASIVVTYTKSQPRVGLSAXFAMVGHTIPV 618
           K+  K   +NI   N   VT   S+VVT   +      ++  +M G T+P+
Sbjct: 809 KEQKKSEEKNI---NDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPI 856


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 119 QLVANGPLKFWVLWVLNNRMGLPRASATYDV 211
           Q  A G     +LW +NN+   P++ + Y +
Sbjct: 797 QCEAQGEKPIGILWNMNNKRLDPKSDSRYTI 827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,817
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)