Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J08
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 209 1e-54
11_01_0155 - 1287003-1287452 209 1e-54
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 35 0.041
07_03_0227 - 15398371-15398925 29 2.0
06_03_0062 + 16116893-16117029,16117472-16117760 29 2.0
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.7
01_06_0683 - 31173763-31174635,31175146-31175436 28 4.7
12_02_0447 + 19160178-19160302,19160531-19160813 28 6.2
11_01_0523 - 4109070-4109984,4110532-4110936 28 6.2
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.2
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 27 8.2
02_05_0156 + 26341904-26342801,26343469-26344148 27 8.2
>12_01_0152 - 1168928-1169377
Length = 149
Score = 209 bits (511), Expect = 1e-54
Identities = 93/143 (65%), Positives = 117/143 (81%)
Frame = +2
Query: 53 REPIQAVQVFGRNXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 232
R P VQ FGR TA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 233 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 412
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 413 PRRCEPKKFGGPGARARYQKSYR 481
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 209 bits (511), Expect = 1e-54
Identities = 93/143 (65%), Positives = 117/143 (81%)
Frame = +2
Query: 53 REPIQAVQVFGRNXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 232
R P VQ FGR TA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 233 SMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 412
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 413 PRRCEPKKFGGPGARARYQKSYR 481
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 35.1 bits (77), Expect = 0.041
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +2
Query: 83 GRNXTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 262
G+ + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 263 GGGHVAQVYAIRQAISKAL 319
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 203 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 93
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 158 MDARLHAAFHDHA--CNTQLRWRFXYVRILGRPGW 60
+DARL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 177 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 275
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 60 PSRPSKYSDVXKPPPQLRIASVVMECCV*TGVHWTWLSPDCCSTNFRNLSFCSARKNSLW 239
PS+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQW 275
Query: 240 ST 245
T
Sbjct: 276 RT 277
>12_02_0447 + 19160178-19160302,19160531-19160813
Length = 135
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 3 AGRCFSLSKWLLCRXQXVSPSRPSKYSDVXKPPPQLRI 116
A C + S W + ++ + S+ + KPPPQL++
Sbjct: 92 ASSCSAASSWCTMTGRAITTAVASQRRNQPKPPPQLKL 129
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 263 GGGHVAQVYAIRQAISKALIAFY 331
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 146 NGRPLDLVEPRLLQYKLQEPILLL 217
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 337 FLIEGNQGL*NSLSDSVNLCYMTTTLDCHSDV 242
+LIEGN L N L D VN+ TT + + V
Sbjct: 332 YLIEGNMQLPNQLGDIVNVTDATTRRNLQNSV 363
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 500 WFR*RLNGKISGIWHGH 450
WFR R G I GIW+ H
Sbjct: 155 WFRGRRRGLIMGIWNAH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,061
Number of Sequences: 37544
Number of extensions: 365882
Number of successful extensions: 958
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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