Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J03
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   222   3e-58
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   211   5e-55
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...   134   9e-32
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    30   2.1  
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268...    28   8.6  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  222 bits (542), Expect = 3e-58
 Identities = 102/189 (53%), Positives = 138/189 (73%)
 Frame = +1

Query: 157 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 336
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 337 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 516
           +L R+AR +G +YV  EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126

Query: 517 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKRLHKHNIICVED 696
           +NMLR  EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++ + L KH+IIC+ED
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186

Query: 697 LIHXIFTVG 723
           L+H I TVG
Sbjct: 187 LVHEIMTVG 195


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  211 bits (515), Expect = 5e-55
 Identities = 99/191 (51%), Positives = 137/191 (71%), Gaps = 6/191 (3%)
 Frame = +1

Query: 169 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 348
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +EY  +E++ ++L R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 349 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 528
           +AR +G +YV  E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129

Query: 529 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKR------LHKHNIICV 690
           R  EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++ +       L KH+IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189

Query: 691 EDLIHXIFTVG 723
           EDL+H I TVG
Sbjct: 190 EDLVHEIMTVG 200


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score =  134 bits (323), Expect = 9e-32
 Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 3/197 (1%)
 Frame = +1

Query: 142 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 321
           +E +++LP V E+VLK             +    +R       +   KR E +V+E+R K
Sbjct: 3   EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62

Query: 322 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 492
           E D +R+  + + R     P E   +KL F IRI G   + P +R++L+  RL Q+  GV
Sbjct: 63  ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120

Query: 493 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKRLHK 672
           F++   AT+  L + EP+I +G+PNLK+V++L+YK+G   L  +  P+TSN ++ K L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180

Query: 673 HNIICVEDLIHXIFTVG 723
           + IIC+EDL+H I +VG
Sbjct: 181 YGIICLEDLVHEIASVG 197


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 235 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 375
           TL+ R+  IK KRE+F  KR E  ++E  ++ +  E+ +   A NR   +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198


>01_06_0457 -
           29524544-29525962,29526518-29526606,29526841-29526892,
           29527573-29527677,29528181-29528208,29528279-29528343,
           29528808-29528880,29528932-29529113
          Length = 670

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 543 LHCLGIPQLKECP*VSIQTWIRQAEW 620
           LHC G+PQ+K        +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,966,619
Number of Sequences: 37544
Number of extensions: 344832
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)