Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J02
(685 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000E47207 Cluster: PREDICTED: hypothetical protein;... 77 4e-13
UniRef50_O43542 Cluster: DNA-repair protein XRCC3; n=19; Euteleo... 73 7e-12
UniRef50_UPI0000D56187 Cluster: PREDICTED: similar to CG3325-PA;... 66 1e-09
UniRef50_Q54QU4 Cluster: AAA ATPase domain-containing protein; n... 65 2e-09
UniRef50_UPI000065EE6A Cluster: DNA-repair protein XRCC3 (X-ray ... 62 9e-09
UniRef50_UPI0000DB74C1 Cluster: PREDICTED: similar to DNA-repair... 60 4e-08
UniRef50_Q18FI4 Cluster: DNA repair and recombination protein Ra... 60 4e-08
UniRef50_A5DET9 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07
UniRef50_Q8TUJ3 Cluster: DNA repair protein; n=6; Euryarchaeota|... 58 3e-07
UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1; Schizosa... 57 3e-07
UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p... 57 5e-07
UniRef50_Q8PZN5 Cluster: DNA repair and recombination protein ra... 57 5e-07
UniRef50_A2QR86 Cluster: Remark: alternate names = YDR004W; n=1;... 56 6e-07
UniRef50_A4S5M9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 56 1e-06
UniRef50_Q8TVF0 Cluster: RadA recombinase; n=1; Methanopyrus kan... 56 1e-06
UniRef50_UPI0000D55904 Cluster: PREDICTED: similar to Meiotic re... 55 1e-06
UniRef50_UPI000023E7C1 Cluster: hypothetical protein FG00844.1; ... 55 1e-06
UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1; ... 55 1e-06
UniRef50_Q8ZYR9 Cluster: DNA repair and recombination protein ra... 55 2e-06
UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia stipitis... 54 2e-06
UniRef50_Q55075 Cluster: DNA repair and recombination protein ra... 54 2e-06
UniRef50_Q1DS44 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_Q9HPF2 Cluster: DNA repair and recombination protein ra... 53 6e-06
UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;... 53 6e-06
UniRef50_Q17A54 Cluster: Spindle-b recombination protein spn-b; ... 53 7e-06
UniRef50_Q6C269 Cluster: Yarrowia lipolytica chromosome F of str... 52 1e-05
UniRef50_Q0V430 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_A1RY65 Cluster: Rad51-like; n=1; Thermofilum pendens Hr... 52 1e-05
UniRef50_Q4N299 Cluster: Putative uncharacterized protein; n=2; ... 51 2e-05
UniRef50_A7E7I5 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_Q2FSR3 Cluster: ATPase; n=4; Methanomicrobiales|Rep: AT... 51 3e-05
UniRef50_A7DQP6 Cluster: RecA/RadA recombinase-like protein; n=1... 51 3e-05
UniRef50_Q7ZTX4 Cluster: Zgc:56581; n=6; Euteleostomi|Rep: Zgc:5... 50 4e-05
UniRef50_Q4FY15 Cluster: Putative uncharacterized protein; n=3; ... 50 5e-05
UniRef50_Q6FIZ6 Cluster: Similar to sp|P25301 Saccharomyces cere... 50 5e-05
UniRef50_A6RPX0 Cluster: Putative uncharacterized protein; n=2; ... 50 5e-05
UniRef50_O28184 Cluster: DNA repair and recombination protein ra... 50 5e-05
UniRef50_A7ATP8 Cluster: Rad51 protein, putative; n=1; Babesia b... 50 7e-05
UniRef50_Q757K4 Cluster: AER008Wp; n=1; Eremothecium gossypii|Re... 50 7e-05
UniRef50_Q9FKM5 Cluster: DNA-repair protein XRCC3 homolog; n=18;... 50 7e-05
UniRef50_Q9HJD3 Cluster: DNA repair and recombination protein ra... 49 9e-05
UniRef50_Q99131 Cluster: REC2 protein; n=1; Ustilago maydis|Rep:... 49 1e-04
UniRef50_Q5JET4 Cluster: DNA repair and recombination protein ra... 49 1e-04
UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5... 49 1e-04
UniRef50_A4R1B5 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_O93748 Cluster: DNA repair and recombination protein ra... 48 2e-04
UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like... 48 2e-04
UniRef50_Q69KV4 Cluster: Trad-like protein; n=3; Oryza sativa|Re... 48 2e-04
UniRef50_Q6CMV0 Cluster: Similar to sp|P25301 Saccharomyces cere... 48 2e-04
UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=4... 48 2e-04
UniRef50_Q9P6E6 Cluster: Related to RAD57 protein; n=2; Neurospo... 48 3e-04
UniRef50_A1CPK9 Cluster: DNA repair protein (Rad57), putative; n... 48 3e-04
UniRef50_A5UKT8 Cluster: DNA repair protein, RadB; n=1; Methanob... 48 3e-04
UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodi... 47 4e-04
UniRef50_Q4E2R1 Cluster: DNA recombination and repair protein RA... 47 4e-04
UniRef50_Q4CWC1 Cluster: DNA repair protein, putative; n=3; Tryp... 47 4e-04
UniRef50_Q386Q5 Cluster: Recombinase Rad51, putative; n=1; Trypa... 47 4e-04
UniRef50_A7AT31 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q6L2I8 Cluster: DNA repair and recombination protein Ra... 47 4e-04
UniRef50_Q4SEP3 Cluster: Chromosome undetermined SCAF14615, whol... 47 5e-04
UniRef50_Q6BWA8 Cluster: Similar to sp|P25301 Saccharomyces cere... 47 5e-04
UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_A6QWV8 Cluster: Predicted protein; n=1; Ajellomyces cap... 46 7e-04
UniRef50_Q9V2F6 Cluster: DNA repair and recombination protein ra... 46 7e-04
UniRef50_Q9HMM4 Cluster: DNA repair and recombination protein ra... 46 7e-04
UniRef50_Q9LQQ2 Cluster: DNA repair protein RAD51 homolog 4; n=6... 46 7e-04
UniRef50_UPI00006CB33C Cluster: hypothetical protein TTHERM_0045... 46 9e-04
UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;... 46 9e-04
UniRef50_Q2GW05 Cluster: Putative uncharacterized protein; n=1; ... 46 9e-04
UniRef50_O27728 Cluster: DNA repair and recombination protein ra... 46 9e-04
UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1 homo... 46 9e-04
UniRef50_Q01C18 Cluster: Rad51B protein; n=2; Ostreococcus|Rep: ... 46 0.001
UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;... 45 0.002
UniRef50_Q6YU07 Cluster: Putative XRCC3; n=2; Oryza sativa|Rep: ... 45 0.002
UniRef50_O58001 Cluster: DNA repair and recombination protein ra... 45 0.002
UniRef50_Q49593 Cluster: DNA repair and recombination protein ra... 45 0.002
UniRef50_P25301 Cluster: DNA repair protein RAD57; n=2; Saccharo... 45 0.002
UniRef50_Q384W8 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111; Eukary... 45 0.002
UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=3... 45 0.002
UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=3... 44 0.003
UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5; Gammaprot... 44 0.003
UniRef50_Q8TWK1 Cluster: RadA recombinase; n=1; Methanopyrus kan... 44 0.003
UniRef50_Q2NHD1 Cluster: RadB; n=1; Methanosphaera stadtmanae DS... 44 0.003
UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=2... 44 0.003
UniRef50_Q3JBH0 Cluster: KaiC; n=2; Chromatiales|Rep: KaiC - Nit... 44 0.005
UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep: R... 43 0.006
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh... 43 0.006
UniRef50_Q16EQ5 Cluster: Rad51A protein, putative; n=1; Aedes ae... 43 0.006
UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome sh... 43 0.008
UniRef50_A0DFA4 Cluster: Chromosome undetermined scaffold_49, wh... 43 0.008
UniRef50_A4S2Y8 Cluster: Predicted protein; n=1; Ostreococcus lu... 42 0.011
UniRef50_Q0D0U2 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_O29797 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_UPI0000E46317 Cluster: PREDICTED: similar to Trad; n=1;... 42 0.014
UniRef50_Q7UMQ5 Cluster: Putative uncharacterized protein; n=3; ... 42 0.014
UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Re... 42 0.014
UniRef50_A3FQA6 Cluster: Putative uncharacterized protein; n=2; ... 42 0.014
UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein k... 42 0.019
UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n... 42 0.019
UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1, put... 42 0.019
UniRef50_Q5K9D6 Cluster: RAD57 protein, putative; n=2; Filobasid... 42 0.019
UniRef50_Q5JDP8 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 42 0.019
UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-leng... 41 0.024
UniRef50_A2XZT8 Cluster: Putative uncharacterized protein; n=2; ... 41 0.024
UniRef50_Q4Q3T8 Cluster: Recombinase Rad51, putative; n=3; Leish... 41 0.024
UniRef50_Q24DN8 Cluster: Putative uncharacterized protein; n=1; ... 41 0.024
UniRef50_Q12UA7 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 41 0.024
UniRef50_A1RYZ3 Cluster: Rad51-like; n=1; Thermofilum pendens Hr... 41 0.024
UniRef50_A0B9F0 Cluster: Putative circadian clock protein, KaiC;... 41 0.024
UniRef50_Q7U4K5 Cluster: Protein recA; n=10; cellular organisms|... 41 0.024
UniRef50_P47581 Cluster: Protein recA; n=2; Mycoplasma|Rep: Prot... 41 0.024
UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo sapie... 41 0.032
UniRef50_Q8SZ30 Cluster: RE19845p; n=2; Sophophora|Rep: RE19845p... 41 0.032
UniRef50_Q1JSB1 Cluster: Putative uncharacterized protein; n=1; ... 41 0.032
UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomy... 41 0.032
UniRef50_Q8G3Y2 Cluster: DNA repair protein radA; n=4; Bifidobac... 40 0.043
UniRef50_Q89T73 Cluster: Protein recA; n=9; Bacteria|Rep: Protei... 40 0.043
UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1; Dicty... 40 0.043
UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM1... 40 0.043
UniRef50_Q18BZ3 Cluster: ABC transporter, ATP-binding/permease p... 40 0.075
UniRef50_Q02AB2 Cluster: RecA domain protein; n=1; Solibacter us... 40 0.075
UniRef50_Q30L73 Cluster: Gp72; n=1; Listeria phage P100|Rep: Gp7... 40 0.075
UniRef50_Q1ZXF0 Cluster: Putative DNA repair protein; n=1; Dicty... 40 0.075
UniRef50_Q3SA55 Cluster: ATPase RecA-superfamily; n=1; unculture... 40 0.075
UniRef50_Q580V2 Cluster: DNA repair protein, putative; n=1; Tryp... 39 0.099
UniRef50_Q0W872 Cluster: Predicted RecA-family ATPase; n=2; Eury... 39 0.099
UniRef50_A0RYZ3 Cluster: RecA/RadA recombinase related protein; ... 39 0.099
UniRef50_Q00XV2 Cluster: RAD51-like protein 2; n=2; Ostreococcus... 39 0.13
UniRef50_A5HL42 Cluster: DNA primase/helicase; n=1; Phormidium p... 39 0.13
UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1... 39 0.13
UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 39 0.13
UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1; ... 39 0.13
UniRef50_Q3ADP9 Cluster: Conserved domain protein; n=1; Carboxyd... 38 0.17
UniRef50_A7KV38 Cluster: RecA; n=1; Bacillus phage 0305phi8-36|R... 38 0.17
UniRef50_O58563 Cluster: Putative uncharacterized protein PH0833... 38 0.17
UniRef50_O29483 Cluster: Putative uncharacterized protein; n=1; ... 38 0.17
UniRef50_UPI0000585DAC Cluster: PREDICTED: similar to RAD51-like... 38 0.23
UniRef50_Q8F261 Cluster: DNA repair protein radA-like protein; n... 38 0.23
UniRef50_A0MN30 Cluster: RecA/RadA recombinase; n=1; Thermus pha... 38 0.23
UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:... 38 0.23
UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in s... 38 0.23
UniRef50_Q04761 Cluster: Protein recA; n=310; Bacteria|Rep: Prot... 38 0.23
UniRef50_O14129 Cluster: DNA repair protein rhp55; n=1; Schizosa... 38 0.23
UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9; Clostridi... 38 0.30
UniRef50_Q08YR0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.30
UniRef50_Q93YY9 Cluster: RAD51C protein; n=1; Chlamydomonas rein... 38 0.30
UniRef50_Q4CYK4 Cluster: DNA repair protein, putative; n=2; Tryp... 38 0.30
UniRef50_O27166 Cluster: Conserved protein; n=1; Methanothermoba... 38 0.30
UniRef50_Q9PR61 Cluster: Protein recA; n=1; Ureaplasma parvum|Re... 38 0.30
UniRef50_P38953 Cluster: DNA repair protein RAD55; n=2; Saccharo... 38 0.30
UniRef50_Q948V7 Cluster: Chloroplast DNA recombination protein R... 37 0.40
UniRef50_Q5JQE4 Cluster: OSJNBa0096F01.14 protein; n=6; Oryza sa... 37 0.40
UniRef50_Q6CPZ2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 37 0.40
UniRef50_Q3IN66 Cluster: Probable KaiC-like transcriptional regu... 37 0.40
UniRef50_A6G4M7 Cluster: DNA repair protein radA; n=1; Plesiocys... 37 0.53
UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.53
UniRef50_Q6FM82 Cluster: Similar to sp|P38953 Saccharomyces cere... 37 0.53
UniRef50_Q0W053 Cluster: Putative ATPase; n=1; uncultured methan... 37 0.53
UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6... 37 0.53
UniRef50_P74646 Cluster: Circadian clock protein kinase kaiC; n=... 37 0.53
UniRef50_Q05FN0 Cluster: Protein recA; n=1; Candidatus Carsonell... 36 0.70
UniRef50_A0XYW8 Cluster: DNA repair protein radA; n=9; Proteobac... 36 0.70
UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Re... 36 0.70
UniRef50_Q17EK1 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
UniRef50_Q74ZR1 Cluster: AGR137Wp; n=1; Eremothecium gossypii|Re... 36 0.70
UniRef50_Q8ZT96 Cluster: Putative uncharacterized protein PAE336... 36 0.70
UniRef50_O29893 Cluster: Putative uncharacterized protein; n=1; ... 36 0.70
UniRef50_A7IAV9 Cluster: HTR-like protein; n=1; Candidatus Metha... 36 0.70
UniRef50_A7D6B3 Cluster: KaiC domain protein; n=6; cellular orga... 36 0.70
UniRef50_Q39199 Cluster: DNA repair protein recA homolog 1, chlo... 36 0.70
UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to RAD51L2/RA... 36 0.92
UniRef50_Q8ENR4 Cluster: Hypothetical conserved protein; n=1; Oc... 36 0.92
UniRef50_Q7NHX9 Cluster: DNA repair protein radA; n=23; Bacteria... 36 0.92
UniRef50_Q7MXG3 Cluster: DNA repair protein RadA; n=33; Bacteria... 36 0.92
UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage Ma-LM... 36 0.92
UniRef50_Q7R451 Cluster: GLP_254_31158_29860; n=1; Giardia lambl... 36 0.92
UniRef50_P43705 Cluster: Protein recA; n=176; root|Rep: Protein ... 36 0.92
UniRef50_UPI000038E425 Cluster: hypothetical protein Faci_030018... 36 1.2
UniRef50_A6W1I1 Cluster: DNA repair protein RadA; n=66; Proteoba... 36 1.2
UniRef50_A5NQF2 Cluster: KaiC domain protein; n=1; Methylobacter... 36 1.2
UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3; Cyanobact... 36 1.2
UniRef50_A7L3L0 Cluster: Replicative DNA helicase; n=1; Enteroco... 36 1.2
UniRef50_A7TGZ2 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q8ZYK9 Cluster: Putative uncharacterized protein PAE072... 36 1.2
UniRef50_Q3IML2 Cluster: Probable KaiC-like transcriptional regu... 36 1.2
UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1; ... 35 1.6
UniRef50_Q6KHJ5 Cluster: Phosphoglycerate kinase; n=10; Mycoplas... 35 1.6
UniRef50_Q7D3Y2 Cluster: AGR_pAT_129p; n=4; Rhizobiaceae|Rep: AG... 35 1.6
UniRef50_Q1IJA5 Cluster: Protein recA; n=1; Acidobacteria bacter... 35 1.6
UniRef50_A7HJZ5 Cluster: DNA repair protein RadA; n=2; Thermotog... 35 1.6
UniRef50_Q8ZXQ7 Cluster: Putative uncharacterized protein PAE115... 35 1.6
UniRef50_Q8RY99 Cluster: DNA repair protein recA homolog 2, mito... 35 1.6
UniRef50_P24517 Cluster: DNA repair protein radA; n=195; Bacteri... 35 1.6
UniRef50_P73860 Cluster: KaiC-like protein 1; n=17; cellular org... 35 1.6
UniRef50_UPI00015BAB16 Cluster: putative circadian clock protein... 35 2.1
UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7; Proteobac... 35 2.1
UniRef50_Q31D48 Cluster: DNA repair protein RadA; n=5; Prochloro... 35 2.1
UniRef50_Q4LDC0 Cluster: Protein recA; n=4; cellular organisms|R... 35 2.1
UniRef50_Q4E6H0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q1CXY6 Cluster: Putative uncharacterized protein; n=2; ... 35 2.1
UniRef50_A5IP72 Cluster: ABC transporter related; n=7; Staphyloc... 35 2.1
UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79; Proteoba... 35 2.1
UniRef50_A3ZNU6 Cluster: RecA protein; n=1; Blastopirellula mari... 35 2.1
UniRef50_Q4CZQ5 Cluster: DNA repair protein, putative; n=2; Tryp... 35 2.1
UniRef50_A3LR58 Cluster: ATP-dependent ABC transporter; n=4; Sac... 35 2.1
UniRef50_Q4JB87 Cluster: Conserved protein; n=7; Thermoprotei|Re... 35 2.1
UniRef50_Q2FNQ2 Cluster: Putative circadian clock protein, KaiC;... 35 2.1
UniRef50_O50248 Cluster: DNA repair and recombination protein ra... 35 2.1
UniRef50_P65954 Cluster: DNA repair protein radA homolog; n=43; ... 35 2.1
UniRef50_O66827 Cluster: DNA repair protein radA homolog; n=1; A... 35 2.1
UniRef50_Q48N05 Cluster: Circadian oscillation regulator KaiC ho... 34 2.8
UniRef50_Q1DEE6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1; Syntropho... 34 2.8
UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in s... 34 2.8
UniRef50_A4VM13 Cluster: RecA-superfamily ATPase implicated in s... 34 2.8
UniRef50_A3EUB1 Cluster: DNA repair protein radA; n=1; Leptospir... 34 2.8
UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 - B... 34 2.8
UniRef50_Q389E0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q0W7M9 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q0W7M6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_Q2CB22 Cluster: Protein recA; n=5; Proteobacteria|Rep: ... 34 3.7
UniRef50_Q034K4 Cluster: Protein recA; n=5; Bacteria|Rep: Protei... 34 3.7
UniRef50_A7AB26 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_Q8PXX7 Cluster: Putative DNA integration/recombination/... 34 3.7
UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 34 3.7
UniRef50_Q0W7N5 Cluster: Predicted ATPase; n=1; uncultured metha... 34 3.7
UniRef50_Q0W7M8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_A3DM91 Cluster: NADH/Ubiquinone/plastoquinone (Complex ... 34 3.7
UniRef50_A1RXK0 Cluster: Putative circadian clock protein, KaiC;... 34 3.7
UniRef50_Q8EVC7 Cluster: Protein recA; n=2; Mycoplasma|Rep: Prot... 34 3.7
UniRef50_Q8G4G9 Cluster: Protein recA; n=1571; root|Rep: Protein... 34 3.7
UniRef50_Q9ZUP2 Cluster: DNA repair protein recA homolog 3; n=11... 34 3.7
UniRef50_O83985 Cluster: DNA repair protein radA homolog; n=3; B... 34 3.7
UniRef50_UPI0000DB79CA Cluster: PREDICTED: similar to Mediator c... 33 4.9
UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4; Deinococc... 33 4.9
UniRef50_Q67LV6 Cluster: Protein recA; n=1; Symbiobacterium ther... 33 4.9
UniRef50_Q3F0X4 Cluster: RecA protein; n=1; Bacillus thuringiens... 33 4.9
UniRef50_Q1QT32 Cluster: Putative circadian clock protein, KaiC;... 33 4.9
UniRef50_Q0AB05 Cluster: Putative circadian clock protein, KaiC;... 33 4.9
UniRef50_Q097S5 Cluster: Putative uncharacterized protein; n=1; ... 33 4.9
UniRef50_A6NUV1 Cluster: DNA repair protein radA; n=1; Bacteroid... 33 4.9
UniRef50_A4KR69 Cluster: Hypothetical membrane protein; n=11; Fr... 33 4.9
UniRef50_A0VKZ0 Cluster: DnaB-like helicase-like; n=1; Delftia a... 33 4.9
UniRef50_A0L497 Cluster: DNA repair protein RadA; n=6; Bacteria|... 33 4.9
UniRef50_Q9V040 Cluster: RecA family AAA ATPase; n=5; Thermococc... 33 4.9
UniRef50_UPI000050F9DD Cluster: COG3638: ABC-type phosphate/phos... 33 6.5
UniRef50_Q5PBN4 Cluster: DNA repair protein radA; n=7; Anaplasma... 33 6.5
UniRef50_Q4JXK0 Cluster: DNA repair protein RadA; n=1; Corynebac... 33 6.5
UniRef50_Q5ULN8 Cluster: Orf76; n=1; Lactobacillus phage LP65|Re... 33 6.5
UniRef50_Q55GF4 Cluster: ABC transporter G family protein; n=2; ... 33 6.5
UniRef50_P0A451 Cluster: Protein recA; n=334; root|Rep: Protein ... 33 6.5
UniRef50_UPI00015BDD71 Cluster: UPI00015BDD71 related cluster; n... 33 8.6
UniRef50_UPI000067400A Cluster: hypothetical protein Bpse4_03000... 33 8.6
UniRef50_Q8KD59 Cluster: DNA repair protein RadA; n=10; Chlorobi... 33 8.6
UniRef50_Q5ZWH0 Cluster: DNA integration/recombination/inversion... 33 8.6
UniRef50_Q2BY22 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_Q1N9P1 Cluster: Putative uncharacterized protein; n=2; ... 33 8.6
UniRef50_A7HWA3 Cluster: Fatty acid desaturase; n=1; Parvibaculu... 33 8.6
UniRef50_A4M8G8 Cluster: AAA ATPase; n=1; Petrotoga mobilis SJ95... 33 8.6
UniRef50_A3UYM0 Cluster: Putative uncharacterized protein; n=5; ... 33 8.6
UniRef50_Q22MH6 Cluster: ABC transporter family protein; n=3; Te... 33 8.6
UniRef50_Q9UXG4 Cluster: Putative uncharacterized protein ORF-c4... 33 8.6
UniRef50_Q5V0B5 Cluster: Circadian regulator; n=1; Haloarcula ma... 33 8.6
UniRef50_Q2FNQ1 Cluster: HTR-like protein; n=1; Methanospirillum... 33 8.6
UniRef50_A5UKJ8 Cluster: Conserved hypothetical membrane protein... 33 8.6
UniRef50_P35901 Cluster: Protein recA (Recombinase A) [Contains:... 33 8.6
>UniRef50_UPI0000E47207 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 355
Score = 77.0 bits (181), Expect = 4e-13
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 17/151 (11%)
Frame = +1
Query: 259 LFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHI-SAKSFTCRELLVK 435
+ ++ +A + S + ++ LS D+ R T++ S+D+ ++ VS+ + K+ T L +
Sbjct: 10 ILASLKKANLRSFESVLHLSPADLGRCTKLSSRDVSIILKAVSEEVYKIKNITALTLFKQ 69
Query: 436 NCK--------ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------- 567
+ + ++TGC +D+ L GG I EI G+S +GKTQL L +
Sbjct: 70 SHQEDRKEPTHLTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQ 129
Query: 568 HNLPKCSVYICTEDLFPAKRFNQIMNSIKSR 660
L VYICTED+FP+KR Q+++S R
Sbjct: 130 GGLANGVVYICTEDVFPSKRLQQLISSFNRR 160
>UniRef50_O43542 Cluster: DNA-repair protein XRCC3; n=19;
Euteleostomi|Rep: DNA-repair protein XRCC3 - Homo
sapiens (Human)
Length = 346
Score = 72.9 bits (171), Expect = 7e-12
Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Frame = +1
Query: 244 ILPLN--LFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSF-T 414
+L LN + AI +A + S KE++ S D+KRLT + S ++ + S H+ S T
Sbjct: 5 LLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILT 64
Query: 415 CRELL-------VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-- 567
+L ++ ++S GC +D +L GG I E+ G S +GKTQL L +
Sbjct: 65 ALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAV 124
Query: 568 -----H-NLPKCSVYICTEDLFPAKRFNQIM 642
H L +VYICTED FP KR Q+M
Sbjct: 125 QFPRQHGGLEAGAVYICTEDAFPHKRLQQLM 155
>UniRef50_UPI0000D56187 Cluster: PREDICTED: similar to CG3325-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG3325-PA - Tribolium castaneum
Length = 274
Score = 65.7 bits (153), Expect = 1e-09
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Frame = +1
Query: 364 QLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
+++K + +S K T ++ K +ISTGCS ID I GG I+EI G +G GKT
Sbjct: 13 EVLKESANIVLSGKIGTAHQM-PKWHRISTGCSAIDAITRGGIAVNRISEIVGYAGVGKT 71
Query: 544 QLVLY--------TSIHNLPKCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKN 681
QL L S+ L K VY+CTED FP KR + + + D G N
Sbjct: 72 QLCLQLSLMAQLPISLGGLGKSVVYLCTEDAFPIKRLKDLAITYSLKYHDLGIN 125
>UniRef50_Q54QU4 Cluster: AAA ATPase domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: AAA ATPase
domain-containing protein - Dictyostelium discoideum AX4
Length = 564
Score = 64.9 bits (151), Expect = 2e-09
Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +1
Query: 406 SFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH----- 570
S +L + + K+STGC +D LGGG I EI GESGSGKTQL + S+
Sbjct: 154 SLELEKLQISSIKLSTGCKIMDKCLGGGISPIGITEIAGESGSGKTQLCIQLSLQVQLPF 213
Query: 571 ---NLPKCSVYICTEDLFPAKRFNQIMNSIKS 657
L +YI TE FP KR NQ M ++KS
Sbjct: 214 EMGGLNGACLYITTEPPFPTKRLNQ-MYTVKS 244
>UniRef50_UPI000065EE6A Cluster: DNA-repair protein XRCC3 (X-ray
repair cross-complementing protein 3).; n=1; Takifugu
rubripes|Rep: DNA-repair protein XRCC3 (X-ray repair
cross-complementing protein 3). - Takifugu rubripes
Length = 346
Score = 62.5 bits (145), Expect = 9e-09
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Frame = +1
Query: 271 IDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVS----DHISAKSFTCRE----L 426
+ RA + S ++++ +S L+++ +T + D+Q + + H +
Sbjct: 16 VRRARLRSPRDVLCVSALELQTITGLSPSDVQQLLATAAAACRPHRPVPAVLLHRGECPR 75
Query: 427 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY--------TSIHNLPK 582
L ++ GC I+++L GG G I E+ G+SG+GKTQL L T L
Sbjct: 76 LEPGLRLGVGCVVINELLRGGLPVGRITELSGQSGAGKTQLALQLCLCVQYPTDYGGLDS 135
Query: 583 CSVYICTEDLFPAKRFNQIM 642
+VYICTE+ FP +R Q++
Sbjct: 136 GAVYICTENSFPIRRLQQLV 155
>UniRef50_UPI0000DB74C1 Cluster: PREDICTED: similar to DNA-repair
protein XRCC3 (X-ray repair cross-complementing protein
3); n=1; Apis mellifera|Rep: PREDICTED: similar to
DNA-repair protein XRCC3 (X-ray repair
cross-complementing protein 3) - Apis mellifera
Length = 169
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYIC 600
++TGCSK D +L GG I +I+G + +GKTQL L + LPK ++YIC
Sbjct: 18 LTTGCSKFDTLLQGGITNRGITQIYGAASTGKTQLALQLCLTVQLPKTEGGLAAGAIYIC 77
Query: 601 TEDLFPAKRFNQIMNSIK 654
TE +FP++R +++ ++
Sbjct: 78 TESIFPSRRLQELIQKLE 95
>UniRef50_Q18FI4 Cluster: DNA repair and recombination protein RadB;
n=2; Halobacteriaceae|Rep: DNA repair and recombination
protein RadB - Haloquadratum walsbyi (strain DSM 16790)
Length = 257
Score = 60.5 bits (140), Expect = 4e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN--LPKCSVYICTEDLFP 618
+STGC +D +LGGGF GT+ +++G +GKT ++L ++H +VY+ TE +
Sbjct: 5 LSTGCQSLDSLLGGGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTEGI-S 63
Query: 619 AKRFNQIMNSI 651
+ RF QI + +
Sbjct: 64 SDRFRQIADGV 74
>UniRef50_A5DET9 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 504
Score = 58.0 bits (134), Expect = 2e-07
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Frame = +1
Query: 259 LFEAIDRAGISSTKEIMILSILD--IKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELL- 429
L ++R GI+ T +++ S+LD I RL R + V + KS T R ++
Sbjct: 21 LVTTLERYGIT-TVDLLTASLLDDGISRLARKIGRSPNEVSEFTN---RLKSETTRGIIE 76
Query: 430 -------VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL---- 576
+STG +D L GG + G I EIFG SG+GK+QL+L SI+++
Sbjct: 77 TPVLEPETTTLHVSTGIESLDQRLNGGAKVGDITEIFGASGTGKSQLLLQMSINSVKLHE 136
Query: 577 PKCSVYICTEDLFPAKRFNQI 639
SVYI TE + R ++
Sbjct: 137 SSKSVYISTESVIATSRLEEM 157
>UniRef50_Q8TUJ3 Cluster: DNA repair protein; n=6;
Euryarchaeota|Rep: DNA repair protein - Methanosarcina
acetivorans
Length = 267
Score = 57.6 bits (133), Expect = 3e-07
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = +1
Query: 373 KNIVSDHISAKSFTCRELL-VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
K+I+S IS S C+E +S+GC +D++LGGGF G + ++FG +G+GKT +
Sbjct: 26 KSIIS-LISHTSVKCKERCHTIERLLSSGCKPLDELLGGGFERGIVTQVFGAAGTGKTNI 84
Query: 550 VLYTSIHNLPKCS--VYICTEDLFPAKRFNQI 639
+ ++ + + ++I TE L P RF QI
Sbjct: 85 CIQLAVECVKQGQKVIFIDTEGLSPV-RFKQI 115
>UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp57
- Schizosaccharomyces pombe (Fission yeast)
Length = 354
Score = 57.2 bits (132), Expect = 3e-07
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Frame = +1
Query: 283 GISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCS 462
G ST +++ L I +++R R H +L++ I + + C V + ++TG
Sbjct: 23 GEVSTVDLLTLDITELER--RTHCSQSELLQLIEQISLLLQPVRCSASKVTSKYLTTGDV 80
Query: 463 KIDDILGGGFRTGTINEIFGESGSGKTQ--------LVLYTSIHNLPKCSVYICTEDLFP 618
K+D+ L GG G + EI GESGSGK+Q + L S+ + K +V+I TE
Sbjct: 81 KLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLE 140
Query: 619 AKRFNQIMNSIKSR 660
KR ++ + R
Sbjct: 141 TKRLFELARYLPER 154
>UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p -
Drosophila melanogaster (Fruit fly)
Length = 341
Score = 56.8 bits (131), Expect = 5e-07
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--------IHNLPKC 585
V+ ++S GCS +D GGG T I E+ G +G GKT+L+L S + L K
Sbjct: 83 VRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKG 142
Query: 586 SVYICTEDLFPAKRFNQIMNSIKSRDQDYGKN 681
YICTE FPA+R Q+ + + R + N
Sbjct: 143 VAYICTESSFPARRLLQMSKACEKRHPEMELN 174
>UniRef50_Q8PZN5 Cluster: DNA repair and recombination protein radA;
n=21; Archaea|Rep: DNA repair and recombination protein
radA - Methanosarcina mazei (Methanosarcina frisia)
Length = 325
Score = 56.8 bits (131), Expect = 5e-07
Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Frame = +1
Query: 265 EAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCK 444
E + AG ++ + + + S ++ + + N F +L+++ K
Sbjct: 18 EKLKEAGFNTIEAVAVASPSELATTAEIGESTAAKIINAARQAADIGGFETGDLVLERRK 77
Query: 445 I----STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCS 588
+ +TGC++ D+++GGG T I E++GE GSGKTQ+ +++ L
Sbjct: 78 LVGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGGSV 137
Query: 589 VYICTEDLFPAKRFNQIMNSIKSR 660
+ I TE+ F +R Q++N + +
Sbjct: 138 IIIDTENTFRPERITQMVNGLSEK 161
>UniRef50_A2QR86 Cluster: Remark: alternate names = YDR004W; n=1;
Aspergillus niger|Rep: Remark: alternate names = YDR004W
- Aspergillus niger
Length = 516
Score = 56.4 bits (130), Expect = 6e-07
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Frame = +1
Query: 256 NLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVK 435
++ ++R+ IS T +++ L L++ + R+ D++ + + + + + V
Sbjct: 17 HILPPLERSHIS-TVDLITLDTLEVAKRARVPPADVRRLSAQIIRALHNDPSSSLSVDVP 75
Query: 436 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVY 594
IST +D +L GG TG + E+ GESGSGKTQ +L + L KC++Y
Sbjct: 76 WSAISTLDPTLDALLDGGIPTGYVTEVTGESGSGKTQFLLTLLLAAQLPAPRGLDKCAIY 135
Query: 595 ICTEDLFPAKRFNQIM 642
I TE R +Q++
Sbjct: 136 ISTEAPLSTPRLSQLI 151
>UniRef50_A4S5M9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 288
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL--YTSIHNLPKCSVYICTEDLFP 618
+ TGC ID++LGGG R G + EI G S SGKTQL L S L VY+ T F
Sbjct: 41 LPTGCDAIDELLGGGLRQGQLIEITGPSASGKTQLCLSAAASFAALDNRVVYVDTTGGFS 100
Query: 619 AKRFNQIMNSIKSRDQD 669
A R Q+ + D +
Sbjct: 101 ATRIKQLHRGFFAEDAE 117
>UniRef50_Q8TVF0 Cluster: RadA recombinase; n=1; Methanopyrus
kandleri|Rep: RadA recombinase - Methanopyrus kandleri
Length = 317
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = +1
Query: 244 ILPLNLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRE 423
+LP + ++ GI + ++ + + +T M +D++ ++ + + I + T +
Sbjct: 11 LLPDETVKKLEEKGIVTVEDFIYADPKYLSEVTGMSERDVEDIQEELRN-IDVEFETLEK 69
Query: 424 LLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK 582
L K +I+TG S +D+ILGGG G + E G GSGK+Q+V ++ LP+
Sbjct: 70 LERKRRRITTGSSALDEILGGGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPE 123
>UniRef50_UPI0000D55904 Cluster: PREDICTED: similar to Meiotic
recombination protein DMC1/LIM15 homolog; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Meiotic
recombination protein DMC1/LIM15 homolog - Tribolium
castaneum
Length = 356
Score = 55.2 bits (127), Expect = 1e-06
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Frame = +1
Query: 247 LPLNLFEAIDRAGISSTKEIMILS---ILDIKRLTRMHSKDIQ-LVKNIVSDHISAKSFT 414
+PL E + + GI++ K + + + +L +K IQ + NI + +F
Sbjct: 43 VPLPDIEEMRKIGINTVKGLQMTTTDKLLALKSFNPSKVSKIQEICGNISFSNRFMTAFE 102
Query: 415 CRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
E + KISTG + +D +LGGG + +I ++FGE+GSGKTQ+
Sbjct: 103 VSEACKQVFKISTGSANLDKLLGGGVESMSITQVFGEAGSGKTQI 147
>UniRef50_UPI000023E7C1 Cluster: hypothetical protein FG00844.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00844.1 - Gibberella zeae PH-1
Length = 445
Score = 55.2 bits (127), Expect = 1e-06
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Frame = +1
Query: 259 LFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQ-LVKNI---VSDHISAKSFTCR-- 420
L AI++ +S+T +++ L DI + TR+ D++ L+ I +SD +S +
Sbjct: 19 LIPAIEQNALSTT-DLLTLHPTDIAKQTRLPILDLKRLIATIQASLSDDLSPQQPLLEAE 77
Query: 421 ---ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-------YTSIH 570
E +N IST +D ILGGG G + E GESG+GKTQ +L S H
Sbjct: 78 PDPESTPENNVISTLDDGLDAILGGGVPVGAVTEFTGESGAGKTQALLSLCLAVQLPSPH 137
Query: 571 NLPKCSVYICTEDLFPAKRFNQIMNS 648
L + ++YI TE R Q++ S
Sbjct: 138 GLGREALYISTEATMATSRLAQMLKS 163
>UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 711
Score = 55.2 bits (127), Expect = 1e-06
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Frame = +1
Query: 319 ILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRT 498
+ +IK R ++D+ + + + D++ + ++ +N ISTG +D+ LGGG
Sbjct: 161 VREIKDYIRSLNEDLAVPPSNI-DNLFGDNLNDGDIDYEN-HISTGLPDLDEQLGGGIPI 218
Query: 499 GTINEIFGESGSGKTQLVLYTSIHN-----LPKCSVYICTEDLFPAKRFNQIMNSIKS 657
G ++E+FG SG GK+Q V Y IHN V++ TE +KR I S S
Sbjct: 219 GEVSEVFGASGCGKSQFV-YQIIHNSILQGAKNTVVHVATESFMESKRLKDIFESDSS 275
>UniRef50_Q8ZYR9 Cluster: DNA repair and recombination protein radA;
n=19; Archaea|Rep: DNA repair and recombination protein
radA - Pyrobaculum aerophilum
Length = 333
Score = 54.8 bits (126), Expect = 2e-06
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Frame = +1
Query: 283 GISSTKEIMILSILDIKRLTRMHSKDIQLV---KNIVSDHISAKSFTCRELLVKNCKIST 453
G + ++I S+ ++ + + Q++ + ++ H + E K +IST
Sbjct: 45 GYYTVRDIAFASVKELAEIIGNEDRAQQIIEAARKMLGLHSFISALEVYERRKKIRRIST 104
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYICTED 609
G +D++LGGG T + EI GE GSGKTQL ++ LP+ ++YI TE+
Sbjct: 105 GVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTEN 164
Query: 610 LFPAKRFNQIMNSIKSRDQD 669
F +R QI + + D D
Sbjct: 165 TFRPERIMQIAKA-RGLDSD 183
>UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 541
Score = 54.4 bits (125), Expect = 2e-06
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLPKCS--VYICTED 609
ISTG +D LGGG TG I EIFG SG GK+ ++ ++ N C ++I TE
Sbjct: 88 ISTGLHTLDSDLGGGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCKECIHIGTES 147
Query: 610 LFPAKRFNQIMNSIKSR 660
KR +QI S +S+
Sbjct: 148 FLETKRLHQIQQSYESK 164
>UniRef50_Q55075 Cluster: DNA repair and recombination protein radA;
n=12; Archaea|Rep: DNA repair and recombination protein
radA - Sulfolobus solfataricus
Length = 324
Score = 54.4 bits (125), Expect = 2e-06
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Frame = +1
Query: 220 KKNMYLKRILP---LNLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSD 390
KKN+ LP + + AG SS + + + S D+ + Q + D
Sbjct: 8 KKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67
Query: 391 HISAKSFTCRELLVKNC---KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 561
+ + T E+ + KISTG +D +L GG T T+ E FGE GSGKTQL
Sbjct: 68 ALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQL 127
Query: 562 SIH--------NLPKCSVYICTEDLFPAKRFNQIMNSIKSRDQD 669
S++ L +VYI TE F R+ +I N K+ D
Sbjct: 128 SVNVQLPPEKGGLSGKAVYIDTEGTF---RWERIENMAKALGLD 168
>UniRef50_Q1DS44 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 591
Score = 53.6 bits (123), Expect = 4e-06
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST +DD+L GG TG + EI GESGSGKTQL+L+ + + L K ++YI T
Sbjct: 108 ISTLDPLLDDVLSGGILTGYVTEIAGESGSGKTQLLLHLLLSVQLPPPYGLRKNALYIST 167
Query: 604 EDLFPAKRFNQIMN 645
E R +Q+++
Sbjct: 168 EADLATNRLSQLLD 181
>UniRef50_Q9HPF2 Cluster: DNA repair and recombination protein radB;
n=5; Halobacteriaceae|Rep: DNA repair and recombination
protein radB - Halobacterium salinarium (Halobacterium
halobium)
Length = 236
Score = 53.2 bits (122), Expect = 6e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYICTEDLFP 618
+ TGC +D++LGGG GT+ +++G +GKT + L T++ +VY+ TE L
Sbjct: 8 LPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYVDTEGLSL 67
Query: 619 AKRFNQIMNSIKSRDQDYGKNV 684
A RF Q++ + + + NV
Sbjct: 68 A-RFQQLLEARATDPEAASANV 88
>UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;
Fungi/Metazoa group|Rep: DNA repair protein Rad51
homolog - Drosophila melanogaster (Fruit fly)
Length = 336
Score = 53.2 bits (122), Expect = 6e-06
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 84 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 141
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 142 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 186
>UniRef50_Q17A54 Cluster: Spindle-b recombination protein spn-b;
n=1; Aedes aegypti|Rep: Spindle-b recombination protein
spn-b - Aedes aegypti (Yellowfever mosquito)
Length = 266
Score = 52.8 bits (121), Expect = 7e-06
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS-----VYICTE 606
KI G +D + GGG + I EI G+ GSGKTQ+ L+ ++ +C VYI TE
Sbjct: 29 KIKLGVDALDQLTGGGISSRGIVEIAGDPGSGKTQMCLHLALACQMQCETRKGVVYISTE 88
Query: 607 DLFPAKRFNQIMNSIK 654
FP+KR Q+ +K
Sbjct: 89 HPFPSKRLVQMEQVMK 104
>UniRef50_Q6C269 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 421
Score = 52.4 bits (120), Expect = 1e-05
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--------NLPKCSVYIC 600
ISTG KID ++ GGF TGT+ E+ GES +GK+ +L ++ L K +V+I
Sbjct: 91 ISTGVRKIDTVMNGGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLARGEGGLGKKAVFIS 150
Query: 601 TEDLFPAKRFNQIMNSI 651
TE +R Q+M+ +
Sbjct: 151 TESGLETRRLVQMMDHV 167
>UniRef50_Q0V430 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 551
Score = 52.0 bits (119), Expect = 1e-05
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST ++D LGGG G + E+ GESG+GKTQL+L + + L K +VY+ T
Sbjct: 211 ISTLDEELDAALGGGIPPGYLVEVTGESGAGKTQLLLTLLLAVQLPPPYGLAKSAVYVST 270
Query: 604 EDLFPAKRFNQIMNS 648
E + KR Q+++S
Sbjct: 271 EAVLSTKRLAQLLSS 285
>UniRef50_A1RY65 Cluster: Rad51-like; n=1; Thermofilum pendens Hrk
5|Rep: Rad51-like - Thermofilum pendens (strain Hrk 5)
Length = 250
Score = 52.0 bits (119), Expect = 1e-05
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Frame = +1
Query: 418 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK---- 582
R + ++ +ISTG +DD+L GG G+I E GE G+GKTQ+ S+ LPK
Sbjct: 21 RRVYEESARISTGVRSLDDLLEGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGG 80
Query: 583 ---CSVYICTEDLFPAKRFNQI 639
++Y+ TE F +R QI
Sbjct: 81 LNARALYVDTEGTFRPERIVQI 102
>UniRef50_Q4N299 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 286
Score = 51.2 bits (117), Expect = 2e-05
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +1
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-YTS-------IHNLPKCSVYICTED 609
G +ID L GG G + EI+G SGSGKTQ L TS IH+ +YI T
Sbjct: 31 GVKEIDQALNGGLLLGKVCEIYGPSGSGKTQFALSLTSEVLINNLIHSKDYVVLYIYTNG 90
Query: 610 LFPAKRFNQIMNS 648
FP +R N+I+ S
Sbjct: 91 TFPIERLNEILRS 103
>UniRef50_A7E7I5 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 493
Score = 50.8 bits (116), Expect = 3e-05
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST +D LGGG TG I EI GESG+GKTQ +L + + L ++YI T
Sbjct: 109 ISTLDDDMDRALGGGIPTGYITEITGESGAGKTQFLLTLLLSAQLPAPYGLTAPTLYIST 168
Query: 604 EDLFPAKRFNQIMNS 648
E P R +QI+ +
Sbjct: 169 ESSLPTTRLSQILRT 183
>UniRef50_Q2FSR3 Cluster: ATPase; n=4; Methanomicrobiales|Rep:
ATPase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 234
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFP 618
+S+G + +DD++G G+ I +IFGE GSGK+ L L ++ L + VY TE F
Sbjct: 6 VSSGNAALDDLMGTGYPRKMITQIFGEPGSGKSSLCLMAAVSVLKQGESVVYFDTES-FS 64
Query: 619 AKRFNQI 639
A+RF+QI
Sbjct: 65 AERFSQI 71
>UniRef50_A7DQP6 Cluster: RecA/RadA recombinase-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: RecA/RadA
recombinase-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 217
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFP 618
ISTG K+D L GG G I +IFG++G+GKTQL+L +I+++ K +Y T F
Sbjct: 2 ISTGLEKLDKSLFGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDTTGGFR 61
Query: 619 AKRFNQIMNSIKSR 660
+R I +S+
Sbjct: 62 PERILDIQKESESQ 75
>UniRef50_Q7ZTX4 Cluster: Zgc:56581; n=6; Euteleostomi|Rep:
Zgc:56581 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 373
Score = 50.4 bits (115), Expect = 4e-05
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Frame = +1
Query: 256 NLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVK 435
+L E + R + + ++++ ++ +++ RL + ++ +VS + T +L +
Sbjct: 14 DLCERLKRHQLETCQDVLSVTQVELSRLAGLSYPAALNLQRLVSKACAPAVITALDLWKR 73
Query: 436 NCKI--STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKC------- 585
++ ST +D +L GG G + E+ G SG GKTQL + S+ LPK
Sbjct: 74 KEELCFSTSLPALDRLLHGGLPRGALTEVTGPSGCGKTQLCMMLSVLATLPKSLGGLDSG 133
Query: 586 SVYICTEDLFPAKRFNQIMNS 648
+YI TE F A+R ++ S
Sbjct: 134 VIYIDTESAFSAERLVEMAQS 154
>UniRef50_Q4FY15 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 650
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Frame = +1
Query: 448 STGCSKIDDILGGG-FRTGTINEIFGESGSGKTQLVL 555
STGC +D LGGG FR+G + E++GE+G+GKTQL L
Sbjct: 282 STGCMGLDQALGGGGFRSGWVTEVYGEAGAGKTQLGL 318
>UniRef50_Q6FIZ6 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57; n=2; Saccharomycetales|Rep:
Similar to sp|P25301 Saccharomyces cerevisiae YDR004w
RAD57 - Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 466
Score = 50.0 bits (114), Expect = 5e-05
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------K 582
+ N + +TG ID++LGGG T I EIFGES +GK+QL++ + LP K
Sbjct: 81 IPNKQFTTGDLGIDEVLGGGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAK 140
Query: 583 CSVYICTEDLFPAKRFNQIMNSIK 654
C V+I TE P R ++ + K
Sbjct: 141 C-VFITTEGDLPTNRLAGMIEARK 163
>UniRef50_A6RPX0 Cluster: Putative uncharacterized protein; n=2;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 485
Score = 50.0 bits (114), Expect = 5e-05
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST +D LGGG G I E+ GESG+GKTQ +L + H L ++YI T
Sbjct: 109 ISTLDDDMDRALGGGIPAGYITEVTGESGAGKTQFLLTLLLSAQLPAPHGLASPTLYIST 168
Query: 604 EDLFPAKRFNQIMNS 648
E P R +Q++ +
Sbjct: 169 ESSLPITRLSQLLRT 183
>UniRef50_O28184 Cluster: DNA repair and recombination protein radB;
n=1; Archaeoglobus fulgidus|Rep: DNA repair and
recombination protein radB - Archaeoglobus fulgidus
Length = 221
Score = 50.0 bits (114), Expect = 5e-05
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSV-YICTEDLFPA 621
I TG ID +LGGG TGT+ +I+G G+GKT L L + + + V YI TE L
Sbjct: 6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFKVAYIDTEGL-SG 64
Query: 622 KRFNQI 639
+R QI
Sbjct: 65 ERVRQI 70
>UniRef50_A7ATP8 Cluster: Rad51 protein, putative; n=1; Babesia
bovis|Rep: Rad51 protein, putative - Babesia bovis
Length = 346
Score = 49.6 bits (113), Expect = 7e-05
Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Frame = +1
Query: 253 LNLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDI-QLVKNIVSDHI--SAKSFTCRE 423
+++ +A + S ++ ++L++K L+ I ++VK + I +A+ CR
Sbjct: 41 IDVLKAAGYVTLDSIAQVASKTLLEVKGLSEQKVAKIKEIVKELCPPDICTAAEYLECRL 100
Query: 424 LLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLP------- 579
L+K +TG + +D +L GG +G+I EI G+ +GKTQL +I LP
Sbjct: 101 NLIK---FTTGSTALDALLQGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGE 157
Query: 580 -KCSVYICTEDLFPAKRFNQIMN 645
KC ++I T++ F +R I N
Sbjct: 158 GKC-LWIDTQNSFRPERLGPIAN 179
>UniRef50_Q757K4 Cluster: AER008Wp; n=1; Eremothecium gossypii|Rep:
AER008Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 510
Score = 49.6 bits (113), Expect = 7e-05
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Frame = +1
Query: 259 LFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKN 438
L E + G+S + + LS + ++ +I + ++ + A+ F +L +
Sbjct: 21 LLECSQQQGVS-VLDFLTLSPQQLVKMLNRSVSEISKFQELLREEFRAEVFQANPILPAS 79
Query: 439 C--KI---STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP------- 579
K+ +TG ID +L GG T I E+FGES SGK+Q ++ S+ LP
Sbjct: 80 ALKKVQCFTTGDVGIDALLNGGIYTHGITEVFGESSSGKSQFLMQLSLAVQLPLELDGSA 139
Query: 580 -KCSVYICTEDLFPAKRFNQIMNSIKSRD 663
+C V+I TE P KR I + IKSR+
Sbjct: 140 GQC-VFITTESDLPTKR---IESMIKSRE 164
>UniRef50_Q9FKM5 Cluster: DNA-repair protein XRCC3 homolog; n=18;
core eudicotyledons|Rep: DNA-repair protein XRCC3
homolog - Arabidopsis thaliana (Mouse-ear cress)
Length = 304
Score = 49.6 bits (113), Expect = 7e-05
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +1
Query: 436 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------H-NLPKCSV 591
N K++TGC +D L GG ++ EI ESG GKTQL L S+ H L S+
Sbjct: 18 NRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSL 77
Query: 592 YICTEDLFPAKRFNQIMNS 648
Y+ +E FP +R +Q+ ++
Sbjct: 78 YLHSEFPFPFRRLHQLSHT 96
>UniRef50_Q9HJD3 Cluster: DNA repair and recombination protein radB;
n=5; Thermoplasmatales|Rep: DNA repair and recombination
protein radB - Thermoplasma acidophilum
Length = 229
Score = 49.2 bits (112), Expect = 9e-05
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK--CSVYICTEDLF 615
+I TG ID +L GG G I EIFGE GSGKT + + S + + +YI +E L
Sbjct: 12 RIQTGVGCIDALLNGGLEGGIITEIFGEGGSGKTNICMIASCSAMSQGLKVIYIDSEGLS 71
Query: 616 PAKRFNQIMNS 648
P +RF + S
Sbjct: 72 P-ERFLAVCRS 81
>UniRef50_Q99131 Cluster: REC2 protein; n=1; Ustilago maydis|Rep:
REC2 protein - Ustilago maydis (Smut fungus)
Length = 781
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
S+G ++DD+LGGG R+ + E+ GESGSGKTQ+ +
Sbjct: 227 SSGSRELDDLLGGGVRSAVLTELVGESGSGKTQMAI 262
>UniRef50_Q5JET4 Cluster: DNA repair and recombination protein radA
[Contains: Pko radA intein]; n=12; Archaea|Rep: DNA
repair and recombination protein radA [Contains: Pko
radA intein] - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 836
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Frame = +1
Query: 265 EAIDRAGISSTKEIMILSILDIKRLTRMHS----KDIQLVKNI--VSDHISAKSFTCREL 426
E + AG + + I + S L++K + + K IQ + + + A + R
Sbjct: 54 EKLREAGYDTIEAIAVASPLELKEIAGISEGAALKIIQAAREAANIGTFMRADEYMKRRT 113
Query: 427 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGK 540
+ KISTG +D +LGGG T I E+FGE GSGK
Sbjct: 114 TIG--KISTGSKALDKLLGGGIETQAITEVFGEFGSGK 149
>UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 363
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-C------SVYI 597
+I+T CS +D+ILGGG + EI G G GKTQ+ + S++ +P+ C ++YI
Sbjct: 104 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 163
Query: 598 CTEDLFPAKRFNQIMNSIKSRDQDY 672
TE F +R QI + ++Y
Sbjct: 164 DTEGSFMVERALQIAEACVEDMEEY 188
>UniRef50_A4R1B5 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 48.4 bits (110), Expect = 2e-04
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = +1
Query: 421 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLP 579
+L + IST ++D LGGG TG + EI GESG+GKTQ +L + H L
Sbjct: 129 QLAARWSTISTLDPELDAALGGGIPTGYVTEITGESGAGKTQFLLSLLLAVQLPPPHGLG 188
Query: 580 KCSVYICTEDLFPAKRFNQIM 642
+ ++YI TE +R Q++
Sbjct: 189 RKAMYIPTEAALSTRRVAQML 209
>UniRef50_O93748 Cluster: DNA repair and recombination protein radA;
n=2; Thermoprotei|Rep: DNA repair and recombination
protein radA - Cenarchaeum symbiosum
Length = 398
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Frame = +1
Query: 271 IDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHIS-----AKSFTCRELLVK 435
++ +G+ S ++++ +++ ++ M S+ + + I ++ K F + K
Sbjct: 22 LEDSGVHSMMDLVVRGPVELGEISSMSSEICEKIVTIARKRLAETGAITKDFASGSEIYK 81
Query: 436 NCK----ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ 546
+ I+TG +D +LGGG T I E+FGE GSGKTQ
Sbjct: 82 RRQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQ 122
>UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like 3;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
RAD51-like 3 - Tribolium castaneum
Length = 339
Score = 48.0 bits (109), Expect = 2e-04
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Frame = +1
Query: 244 ILPLNLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISA---KSFT 414
+L ++ +A+ + + + + + I ++ R++ ++++ VKN + SA F
Sbjct: 37 LLTEDVVKALHGRKVWTVGDFVKVDTQQIIKIARLNFREVRAVKNYLLKKFSATPVNGFD 96
Query: 415 CRELLVKNCKI-STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL 576
+ ++KN I TG +D +L GG TG I E+ G SGKT VL T I N+
Sbjct: 97 FYKNVLKNTAIIPTGIKGVDQLLNGGLFTGNIYELCGPPASGKTHFVL-TLIKNV 150
>UniRef50_Q69KV4 Cluster: Trad-like protein; n=3; Oryza sativa|Rep:
Trad-like protein - Oryza sativa subsp. japonica (Rice)
Length = 272
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK---CSVYICTEDLF 615
+ TG +D +LGGG R G + EI G+S SGKTQ+ L ++ H + +Y+ T + F
Sbjct: 50 LPTGLQGVDALLGGGLRQGQLTEITGQSSSGKTQVCLCSASHVAARQLGVVMYLDTSNSF 109
Query: 616 PAKRFNQIMN 645
R +I++
Sbjct: 110 SPSRIARIVD 119
>UniRef50_Q6CMV0 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57 DNA repair protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P25301
Saccharomyces cerevisiae YDR004w RAD57 DNA repair
protein - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 480
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYICT 603
+TG +D +LGGG + I EIFGES +GK+QL+L ++ LP+ SVYI T
Sbjct: 90 TTGNLGLDKLLGGGIYSKGITEIFGESSTGKSQLLLQLALSVQLPEDMNGLNGQSVYITT 149
Query: 604 EDLFPAKRFNQIM 642
E P +R I+
Sbjct: 150 EGDLPTRRLKSII 162
>UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=42;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 4 -
Homo sapiens (Human)
Length = 328
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +1
Query: 421 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS---IHNLPKCSV 591
EL +STG +D +L G TG + EI G GSGKTQ+ L + H L + +
Sbjct: 74 ELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVL 133
Query: 592 YICTEDLFPAKRFNQIMNSIKSRDQD 669
Y+ + A R Q++ + K++D++
Sbjct: 134 YVDSNGGLTASRLLQLLQA-KTQDEE 158
>UniRef50_Q9P6E6 Cluster: Related to RAD57 protein; n=2; Neurospora
crassa|Rep: Related to RAD57 protein - Neurospora crassa
Length = 510
Score = 47.6 bits (108), Expect = 3e-04
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ--LVLYTSI-----HNLPKCSVYICT 603
IST ID LGGG G + EI GESG+GKTQ L L S+ H L + ++YI T
Sbjct: 107 ISTLDPDIDRALGGGIPAGYVTEITGESGAGKTQFLLTLLLSVQLPPPHGLGRPALYIST 166
Query: 604 EDLFPAKRFNQIMNS 648
E +R Q++ +
Sbjct: 167 EAPLSTRRLAQMLTT 181
>UniRef50_A1CPK9 Cluster: DNA repair protein (Rad57), putative; n=6;
Trichocomaceae|Rep: DNA repair protein (Rad57), putative
- Aspergillus clavatus
Length = 886
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST +D++L GG G + E+ GESGSGKTQ +L + L K ++YI T
Sbjct: 443 ISTLDPTLDELLNGGVPVGYLTEVTGESGSGKTQFLLGLLLAVQLPEPRGLGKGAIYIST 502
Query: 604 EDLFPAKRFNQIMNS 648
E R +Q++ S
Sbjct: 503 EAALATSRLSQLLES 517
>UniRef50_A5UKT8 Cluster: DNA repair protein, RadB; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: DNA repair
protein, RadB - Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861)
Length = 234
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 436 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT--QLVLYTSIHNLPKCSVYICTED 609
N KI T S ID++L GG GT+ +IFG GSGK+ LVL ++ K VY+ TE
Sbjct: 10 NHKIPTN-SGIDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYVDTEG 68
Query: 610 LFPAKRFNQI 639
R QI
Sbjct: 69 GISINRIKQI 78
>UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodium
yoelii yoelii|Rep: DNA repair protein rhp51 - Plasmodium
yoelii yoelii
Length = 365
Score = 47.2 bits (107), Expect = 4e-04
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS------- 588
K KI+TG S +D LGGGF + +I E+FGE+ GKTQ+ ++ LPK
Sbjct: 105 KVLKITTGSSVLDKTLGGGFESMSITELFGENRCGKTQVCHTLAVTAQLPKSMQGGNGKV 164
Query: 589 VYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
YI TE F ++ +I +D N+
Sbjct: 165 CYIDTEGTFRPEKICKIAQRFGLNSEDVLDNI 196
>UniRef50_Q4E2R1 Cluster: DNA recombination and repair protein
RAD51, putative; n=1; Trypanosoma cruzi|Rep: DNA
recombination and repair protein RAD51, putative -
Trypanosoma cruzi
Length = 492
Score = 47.2 bits (107), Expect = 4e-04
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Frame = +1
Query: 391 HISAKSFTCRELLVKNC-----KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
HI ++ T E+L +++T C ID +LGGG G ++E+ G G GKTQ+++
Sbjct: 100 HIPPETRTLEEMLKVEADKESERVTTFCRGIDTLLGGGLPVGAVSEVCGAPGVGKTQMLM 159
Query: 556 YTSIH-NLPK-------CSVYICTEDLFPAKRFNQIMNS 648
+++ LP+ ++I TE F +RF +I ++
Sbjct: 160 QLAVNCLLPRELGGLHGSCLFIDTEGSFVPERFREIAHA 198
>UniRef50_Q4CWC1 Cluster: DNA repair protein, putative; n=3;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 453
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +1
Query: 472 DILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 570
D GGFR G ++E++GE+GSGKTQLVL + +H
Sbjct: 170 DASDGGFRAGFVSEVYGEAGSGKTQLVLQSLLH 202
>UniRef50_Q386Q5 Cluster: Recombinase Rad51, putative; n=1;
Trypanosoma brucei|Rep: Recombinase Rad51, putative -
Trypanosoma brucei
Length = 507
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPK-------CSVYIC 600
++T C +D +LGGG + GT+ EI G G GKTQL + +++ LPK ++I
Sbjct: 106 VTTLCRSLDILLGGGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQGGCLFID 165
Query: 601 TEDLFPAKRFNQIMNS 648
TE F +RF +I ++
Sbjct: 166 TEGSFLPERFREIASA 181
>UniRef50_A7AT31 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 274
Score = 47.2 bits (107), Expect = 4e-04
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--------VYIC 600
IS G ++IDD LG G + EI+GESGSGKTQ+ L L + +Y
Sbjct: 13 ISLGITEIDDALGDCLLLGMLTEIYGESGSGKTQVALTLVAEELVRMQEADSNDVMLYFQ 72
Query: 601 TEDLFPAKRFNQIM 642
T FP +RF I+
Sbjct: 73 TSRAFPMQRFCDII 86
>UniRef50_Q6L2I8 Cluster: DNA repair and recombination protein RadB;
n=1; Picrophilus torridus|Rep: DNA repair and
recombination protein RadB - Picrophilus torridus
Length = 228
Score = 47.2 bits (107), Expect = 4e-04
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT--QLVLYTSIHNLPKCSVYICTEDLF 615
K+ + ID+++ GG G I EI+G+ GSGKT ++ S+ K +YI TE F
Sbjct: 12 KLPSNVKCIDELMNGGLEPGIITEIYGQGGSGKTNISMIFARSVLLSGKRVIYIDTEG-F 70
Query: 616 PAKRFNQI 639
+RF+QI
Sbjct: 71 STERFSQI 78
>UniRef50_Q4SEP3 Cluster: Chromosome undetermined SCAF14615, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF14615, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 332
Score = 46.8 bits (106), Expect = 5e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +1
Query: 421 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLPKCSV 591
ELL +S+G +D +L GF TG I E+ G GSGK+Q+ ++H +L + V
Sbjct: 74 ELLSSTAILSSGNPSLDKLLDSGFYTGEITELSGGPGSGKSQVCFAAAVHISLHLKQSVV 133
Query: 592 YICTEDLFPAKRFNQIMNSIKSR 660
++ T A R Q++ + S+
Sbjct: 134 FVDTTGGLTAGRLLQMLEAESSK 156
>UniRef50_Q6BWA8 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57 DNA repair protein; n=1;
Debaryomyces hansenii|Rep: Similar to sp|P25301
Saccharomyces cerevisiae YDR004w RAD57 DNA repair
protein - Debaryomyces hansenii (Yeast) (Torulaspora
hansenii)
Length = 569
Score = 46.8 bits (106), Expect = 5e-04
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL----YTSIHNLPKCS--VYICTE 606
I TG +D L GG G I EIFG SG GK+QL+L YT + P+ + +YI TE
Sbjct: 97 IPTGLEALDRQLNGGIPLGEITEIFGASGCGKSQLLLQLCIYTQLVGDPENNQCIYISTE 156
Query: 607 DLFPAKRFNQIMNSIKSR 660
+R + +++ ++
Sbjct: 157 SPLETRRLHDMIDHYNAK 174
>UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 294
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+++TG ++D IL GG TG+I EI+GE SGKTQL
Sbjct: 95 QVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQL 130
>UniRef50_A6QWV8 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 587
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP------KCSVYICT 603
+ST +D +L GG TG + E+ GESG GKTQ +L+ + LP + ++Y+ T
Sbjct: 111 VSTLDPVLDRVLAGGISTGYVTELAGESGCGKTQFLLHLLLSVQLPPPYGTSQKALYLST 170
Query: 604 EDLFPAKRFNQIM 642
E P R +Q++
Sbjct: 171 ESNLPTNRLSQLL 183
>UniRef50_Q9V2F6 Cluster: DNA repair and recombination protein radB;
n=5; Thermococcaceae|Rep: DNA repair and recombination
protein radB - Pyrococcus abyssi
Length = 239
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDL 612
K ++TG +D++LGGG G I +++G +GKT + + N K + Y+ TE
Sbjct: 9 KGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGKVA-YVDTEGG 67
Query: 613 FPAKRFNQIMNS 648
F +R Q+ S
Sbjct: 68 FSPERLKQMAES 79
>UniRef50_Q9HMM4 Cluster: DNA repair and recombination protein radA;
n=160; Halobacteriaceae|Rep: DNA repair and
recombination protein radA - Halobacterium salinarium
(Halobacterium halobium)
Length = 343
Score = 46.4 bits (105), Expect = 7e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--------LYTSIHNLPKCSVYI 597
K++ ++DD+LGGG T +I E++GE G+GK+Q+ L T L +V+I
Sbjct: 81 KLTWNIPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAVFI 140
Query: 598 CTEDLFPAKRFNQIMNSI 651
+ED F +R + ++ +
Sbjct: 141 DSEDTFRPERIDDMVRGL 158
>UniRef50_Q9LQQ2 Cluster: DNA repair protein RAD51 homolog 4; n=6;
Arabidopsis thaliana|Rep: DNA repair protein RAD51
homolog 4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 322
Score = 46.4 bits (105), Expect = 7e-04
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS---IHNLPKCSVYICTEDLF 615
+STG + D +L GGFR G + E+ G S SGKTQ + + N +Y+ T + F
Sbjct: 89 LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGNSF 148
Query: 616 PAKRFNQIMNSIKSRDQDYGKNV 684
A+R Q + S S D G+ V
Sbjct: 149 SARRIAQFICS--SSDATLGQKV 169
>UniRef50_UPI00006CB33C Cluster: hypothetical protein
TTHERM_00459230; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00459230 - Tetrahymena
thermophila SB210
Length = 356
Score = 46.0 bits (104), Expect = 9e-04
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL-----VLYTSIHNL--PKCSVYIC 600
+ISTG +DDIL GG + +I E +GE SGKTQ+ VL S + P +YI
Sbjct: 110 RISTGSKALDDILNGGIESQSITEFYGEYRSGKTQIAHTACVLAQSQDHCQSPGKVLYID 169
Query: 601 TEDLFPAKRFNQI 639
TE F +R QI
Sbjct: 170 TEGTFRPERICQI 182
>UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD57 - Candida albicans (Yeast)
Length = 511
Score = 46.0 bits (104), Expect = 9e-04
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK-----CSVYICTED 609
ISTG ID LGGG G + EIFG SG GK+ L+ + N K ++YI TE
Sbjct: 85 ISTGLPSIDRELGGGIPIGEVTEIFGASGCGKSHF-LFQLLSNCGKEFSTSKNIYISTES 143
Query: 610 LFPAKRFNQIM 642
KR +
Sbjct: 144 FLETKRLKDFI 154
>UniRef50_Q2GW05 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 476
Score = 46.0 bits (104), Expect = 9e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST +D LGGG G + E+ GESG+GKTQ +L + H L + ++YI T
Sbjct: 127 ISTLDPDLDRALGGGIPAGYVTEVTGESGAGKTQFLLSLLLAAQLPPPHGLSRPALYIST 186
Query: 604 EDLFPAKRFNQIMNS 648
E +R Q++ +
Sbjct: 187 EAPLSTRRLAQMLTA 201
>UniRef50_O27728 Cluster: DNA repair and recombination protein radB;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: DNA repair and recombination protein radB -
Methanobacterium thermoautotrophicum
Length = 234
Score = 46.0 bits (104), Expect = 9e-04
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL--PKCSVYICTE 606
+N +I T S ID ILGGG TI + +G GSGKT + + ++ K +V+I TE
Sbjct: 9 ENRRIPTE-SSIDRILGGGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDTE 67
Query: 607 DLFPAKRFNQIMNSIKSRDQD 669
+R Q+ I R D
Sbjct: 68 GGLSVERIRQVSGDIFDRVAD 88
>UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1
homolog; n=111; Eukaryota|Rep: Meiotic recombination
protein DMC1 homolog - Glycine max (Soybean)
Length = 345
Score = 46.0 bits (104), Expect = 9e-04
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+I+TG +D++LGGG T I E FGE SGKTQL
Sbjct: 108 RITTGSQALDELLGGGVETSAITEAFGEFRSGKTQL 143
>UniRef50_Q01C18 Cluster: Rad51B protein; n=2; Ostreococcus|Rep:
Rad51B protein - Ostreococcus tauri
Length = 618
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +1
Query: 439 CKIS-TGCSKIDDILGGGFRTGTINEIFGESGSGKT----QLVLYTSIHNLPKCSVYICT 603
C I+ T C ID L GG RT I E+ GESG+GKT QL L+ + +L +VY+ T
Sbjct: 332 CSIARTRCDAIDAALRGGVRTRQITEVCGESGTGKTHLCAQLALFAQL-DLGGSTVYVHT 390
Query: 604 EDLFP 618
E P
Sbjct: 391 EGRAP 395
>UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;
Pan troglodytes|Rep: PREDICTED: RAD51 homolog C - Pan
troglodytes
Length = 461
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 397 SAKSFTCRELLVKNCK---ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 567
S K T ELL + I T CS +DDILGGG EI G G GKTQL + ++
Sbjct: 126 SRKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 185
Query: 568 H-NLPKCSVYICTEDLF 615
+P+C + E +F
Sbjct: 186 DVQIPECFGGVAGEAVF 202
>UniRef50_Q6YU07 Cluster: Putative XRCC3; n=2; Oryza sativa|Rep:
Putative XRCC3 - Oryza sativa subsp. japonica (Rice)
Length = 290
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 567
K+S GC +D +L GG ++ EI GES SGKTQL L ++
Sbjct: 42 KLSLGCPVLDRLLSGGLPPASVTEIAGESASGKTQLCLQLAL 83
>UniRef50_O58001 Cluster: DNA repair and recombination protein radA
[Contains: Pho radA intein]; n=3; Pyrococcus|Rep: DNA
repair and recombination protein radA [Contains: Pho
radA intein] - Pyrococcus horikoshii
Length = 529
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGK 540
+ISTG +D +LGGG T I E+FGE GSGK
Sbjct: 120 RISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 152
>UniRef50_Q49593 Cluster: DNA repair and recombination protein radA;
n=11; Archaea|Rep: DNA repair and recombination protein
radA - Methanococcus jannaschii
Length = 352
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 621
K+STG +D+ILGGG + ++ E G GSGKTQ + + + NL +C I +D
Sbjct: 110 KLSTGSKNLDEILGGGLESQSVTEFAGMFGSGKTQ-IAHQACVNL-QCPERIVADDAIKD 167
Query: 622 KRFNQ 636
+ N+
Sbjct: 168 EILNE 172
>UniRef50_P25301 Cluster: DNA repair protein RAD57; n=2;
Saccharomyces cerevisiae|Rep: DNA repair protein RAD57 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 460
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Frame = +1
Query: 466 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH---NLP------KCSVYICTEDLFP 618
+D++LGGG T I EIFGES +GK+QL++ ++ + P KC VYI TE P
Sbjct: 107 MDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKC-VYITTEGDLP 165
Query: 619 AKRFNQIMNS 648
+R +++S
Sbjct: 166 TQRLESMLSS 175
>UniRef50_Q384W8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 423
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +1
Query: 340 TRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIF 519
T ++S D L+ V D +S+ F ISTG +DD+L GG + G + EI
Sbjct: 107 TIVNSPDSTLLPISVEDQLSSSCFGV---------ISTGHKCLDDVLAGGVKCGLVTEIT 157
Query: 520 GESGSGKTQLVL 555
G SG+GKT L L
Sbjct: 158 GASGTGKTALAL 169
>UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111;
Eukaryota|Rep: DNA repair protein RAD51 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 400
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
++TG +D +LGGG TG+I E+FGE +GK+QL
Sbjct: 160 LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQL 194
>UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=32;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 3 -
Homo sapiens (Human)
Length = 376
Score = 44.8 bits (101), Expect = 0.002
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 397 SAKSFTCRELLVKNCK---ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 567
S K T ELL + I T CS +DDILGGG EI G G GKTQL + ++
Sbjct: 81 SHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 140
Query: 568 H-NLPKCSVYICTEDLF 615
+P+C + E +F
Sbjct: 141 DVQIPECFGGVAGEAVF 157
>UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=39;
Eukaryota|Rep: Meiotic recombination protein DMC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 334
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+STG ++D ILGGG T +I E+FGE GKTQ+
Sbjct: 96 LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQM 130
>UniRef50_Q1ZFY8 Cluster: DNA repair protein RadA; n=5;
Gammaproteobacteria|Rep: DNA repair protein RadA -
Psychromonas sp. CNPT3
Length = 472
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL-YTSIHNLPKCSVYICTED 609
++STG S++D +LGGG G++ I G+ GSGKT L+ I + ++Y+ E+
Sbjct: 83 RVSTGLSELDRVLGGGITLGSVVLISGDPGSGKTTLLTKVAQIMSQTMVTLYVTAEE 139
>UniRef50_Q8TWK1 Cluster: RadA recombinase; n=1; Methanopyrus
kandleri|Rep: RadA recombinase - Methanopyrus kandleri
Length = 316
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFP 618
I TG D+ +GGG TG I ++G G+GK+Q + H L + +YI TE+ F
Sbjct: 89 IPTGIQGFDERMGGGLPTGVIVGMYGPPGAGKSQFATQVAAHALKEGESVLYIDTENAFR 148
Query: 619 AKRFNQI 639
+R +I
Sbjct: 149 PQRLLEI 155
>UniRef50_Q2NHD1 Cluster: RadB; n=1; Methanosphaera stadtmanae DSM
3091|Rep: RadB - Methanosphaera stadtmanae (strain DSM
3091)
Length = 232
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +1
Query: 460 SKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYTSIHNLPKCSVYICTEDLFPAKRF 630
S +D +LGGG G I + +G GSGKT + +LY + N K ++Y+ TE +R
Sbjct: 17 SSLDKLLGGGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSK-AIYMDTEGGLSLERI 75
Query: 631 NQI 639
QI
Sbjct: 76 QQI 78
>UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=22;
Eukaryota|Rep: DNA repair protein RAD51 homolog 1 - Homo
sapiens (Human)
Length = 339
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+I+TG ++D +L GG TG+I E+FGE +GKTQ+
Sbjct: 101 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQI 136
>UniRef50_Q3JBH0 Cluster: KaiC; n=2; Chromatiales|Rep: KaiC -
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Length = 482
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
STG K+D ILGGG GTI+ I G SG+GK+ L
Sbjct: 245 STGIEKLDKILGGGLEAGTISLITGPSGTGKSTL 278
>UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep:
RAD51 homolog - Mus musculus (Mouse)
Length = 178
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ 546
+I+TG ++D +L GG TG+I E+FGE +GKTQ
Sbjct: 144 QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 178
>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 494
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--NLPKCSVYICT 603
++STG +D +LGGG +I + GE GSGKT L L H K S+Y T
Sbjct: 12 RVSTGVEGLDQVLGGGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKRSLYFTT 67
>UniRef50_Q16EQ5 Cluster: Rad51A protein, putative; n=1; Aedes
aegypti|Rep: Rad51A protein, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 329
Score = 43.2 bits (97), Expect = 0.006
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Frame = +1
Query: 328 IKRLTRMHSKDIQLVKNIVSDHISAKS------FTCRELLVKNCKISTGCSKIDDILGGG 489
+ R++ + ++I VK ++ S F E LV+ K TG +D +L GG
Sbjct: 39 LMRVSNLSYEEISFVKKELTSRFSGNCIQVVEYFRYLEDLVEPLK--TGIRGLDLLLEGG 96
Query: 490 FRTGTINEIFGESGSGKTQL--VLYTSIHNLPKCSV-YICTEDLFPAKRFNQIMNSIKSR 660
G + EIFG+S SGKTQ+ + +I K V Y+ T+ F A+R ++I+ K
Sbjct: 97 LLPGHVMEIFGDSSSGKTQICVTMAANIARNHKFDVFYVDTKCDFFARRIHKILELNKCS 156
Query: 661 DQD 669
Q+
Sbjct: 157 VQE 159
>UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF14738, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 353
Score = 42.7 bits (96), Expect = 0.008
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +1
Query: 280 AGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKN---CKIS 450
AGI + K I + + + + + + +K ++ T E K I+
Sbjct: 26 AGICTVKGIQMTTRKALCNIKGLSEAKVDKIKEAAGKMLNVGFQTASEYSAKRKHVFHIT 85
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
TG + D +LGGG + I E FGE +GKTQL
Sbjct: 86 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQL 118
>UniRef50_A0DFA4 Cluster: Chromosome undetermined scaffold_49, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_49,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 256
Score = 42.7 bits (96), Expect = 0.008
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 475 ILGGGFRTGTINEIFGESGSGKTQ----LVLYTSIHNLPKCSVYICTEDLFPAKRFNQIM 642
++ GG +TG + E++GE+G GKT L++ T I+ +YI T RFNQ++
Sbjct: 32 LISGGIQTGILTELYGEAGCGKTHVCMTLMINTIINYKTSRVIYISTAKQLQQDRFNQLL 91
Query: 643 NSI 651
I
Sbjct: 92 CKI 94
>UniRef50_A4S2Y8 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 351
Score = 42.3 bits (95), Expect = 0.011
Identities = 23/95 (24%), Positives = 45/95 (47%)
Frame = +1
Query: 271 IDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKIS 450
++ G + ++ + + LD+ L + + V+ ++ T + L ++ +
Sbjct: 22 LESRGCRTAEDALYRAPLDVVELADVSMHRARQFIISVAKAVAPTPTTALDALRRSQYVP 81
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+D LGGG R G + E+ G +G+GKTQL L
Sbjct: 82 LVIEDVDKALGGGLRVGAVTEVVGAAGAGKTQLCL 116
>UniRef50_Q0D0U2 Cluster: Putative uncharacterized protein; n=1;
Aspergillus terreus NIH2624|Rep: Putative
uncharacterized protein - Aspergillus terreus (strain
NIH 2624)
Length = 743
Score = 42.3 bits (95), Expect = 0.011
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-------HNLPKCSVYICT 603
IST +D +L GG TG + E+ GES SGKTQ +L + L K ++YI T
Sbjct: 286 ISTLDPALDALLHGGIPTGYLTEVTGESASGKTQFLLTLLLAAQLPAPRGLNKRAIYIST 345
Query: 604 EDLFPAKRFNQIM 642
E R Q++
Sbjct: 346 EAPIATSRLTQML 358
>UniRef50_O29797 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 443
Score = 42.3 bits (95), Expect = 0.011
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +1
Query: 436 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
N KI+TG D++LGGG GT G SG GKT L+L
Sbjct: 237 NNKIATGIDGFDELLGGGIIRGTATAFVGPSGGGKTVLML 276
>UniRef50_UPI0000E46317 Cluster: PREDICTED: similar to Trad; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Trad - Strongylocentrotus purpuratus
Length = 208
Score = 41.9 bits (94), Expect = 0.014
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+STGC ID +L GG T + EI G++ GKTQ L
Sbjct: 45 LSTGCDSIDKLLDGGVYTSELTEIVGQAAVGKTQFCL 81
>UniRef50_Q7UMQ5 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 295
Score = 41.9 bits (94), Expect = 0.014
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 570
++ TG + +D++LGGG GT+ + G +G GKTQL + + H
Sbjct: 4 RLQTGITTLDEMLGGGLLPGTMTVVLGATGIGKTQLGIQFAKH 46
>UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Rep:
Recombinase Rad51 - Plasmodium falciparum
Length = 350
Score = 41.9 bits (94), Expect = 0.014
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
K +TG ++D +L GG TG I E+FGE +GK+QL
Sbjct: 111 KFTTGSKQLDALLKGGIETGGITELFGEFRTGKSQL 146
>UniRef50_A3FQA6 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 304
Score = 41.9 bits (94), Expect = 0.014
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 412 TCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ--LVLYTSI 567
T ++L+ + ++STG + +D GG + EI GE+G+GKTQ L L TS+
Sbjct: 27 TSEQMLMDDTRLSTGSNVVDKAFNGGIPKRILFEITGEAGTGKTQWCLTLITSV 80
>UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein
kinase; n=6; Proteobacteria|Rep: Non-specific
serine/threonine protein kinase - Pseudomonas putida F1
Length = 481
Score = 41.5 bits (93), Expect = 0.019
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+IS+G D++LGGG TG+++ + G SG GKT L L
Sbjct: 242 RISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGL 279
>UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n=1;
Bigelowiella natans|Rep: DNA recombination and repair
protein - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 331
Score = 41.5 bits (93), Expect = 0.019
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ----LVLYTSIHNL----PKCSVYIC 600
IST ID++L GG + ++ EIFGES +GKTQ L + + N K +YI
Sbjct: 93 ISTLNKTIDNLLEGGIESSSVTEIFGESKTGKTQFCHILCVSAMVDNYSFVQTKKVIYID 152
Query: 601 TEDLFPAKRFNQIMNSIK 654
TE F +R +I K
Sbjct: 153 TEGNFRPERLIEISEKFK 170
>UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1,
putative; n=2; Ostreococcus|Rep: Meiotic recombination
protein DMC1, putative - Ostreococcus tauri
Length = 371
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
I+ G + +D IL GGF T I EIFGE GKTQ+
Sbjct: 135 ITCGAAAVDAILNGGFETRAITEIFGEWRCGKTQI 169
>UniRef50_Q5K9D6 Cluster: RAD57 protein, putative; n=2;
Filobasidiella neoformans|Rep: RAD57 protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 598
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
ISTG +D+ LGGG R G + EI GES +GK+ L
Sbjct: 98 ISTGDEGLDECLGGGLRRGCLYEIAGESAAGKSHFAL 134
>UniRef50_Q5JDP8 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 448
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--LYTSIHNLPKCSVYICTEDLF 615
++ TG +D++LGGG G+I I G +GSGKT L L +++ K +YI E+
Sbjct: 237 RLKTGILGLDELLGGGLYEGSITLIAGPTGSGKTILALNLASNLSKSGKKVLYIAYEESL 296
Query: 616 PAKR 627
A R
Sbjct: 297 AALR 300
Score = 37.5 bits (83), Expect = 0.30
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL 576
I TG +D L GGF G+ + G GSGKT L ++ +N+
Sbjct: 4 IPTGIPSLDKALNGGFSRGSTILLAGNPGSGKTHLAIHVLYNNM 47
>UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence; n=32;
Eukaryota|Rep: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence - Mus
musculus (Mouse)
Length = 285
Score = 41.1 bits (92), Expect = 0.024
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Frame = +1
Query: 283 GISSTKEIMILS---ILDIKRLTRMHSKDIQLVKN--IVSDHISAKSFTCRELLVKNCKI 447
GI + K I + + + ++K L+ + I+ N I ++A ++ R +V + I
Sbjct: 44 GICTIKGIQMTTRRALCNVKGLSEAKVEKIKEAANKLIEPGFLTAFQYSERRKMVFH--I 101
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+TG + D +LGGG + I E FGE +GKTQL
Sbjct: 102 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQL 135
>UniRef50_A2XZT8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 353
Score = 41.1 bits (92), Expect = 0.024
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS-IHNLPKC-------SVYI 597
+++T +D+ L GG G + E+ G SG GKTQ L + + LP+C +YI
Sbjct: 81 RLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECYGGLNGRVLYI 140
Query: 598 CTEDLFPAKRFNQI 639
TE F ++R +I
Sbjct: 141 DTESKFSSRRMIEI 154
>UniRef50_Q4Q3T8 Cluster: Recombinase Rad51, putative; n=3;
Leishmania|Rep: Recombinase Rad51, putative - Leishmania
major
Length = 687
Score = 41.1 bits (92), Expect = 0.024
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Frame = +1
Query: 409 FTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH------ 570
F R+ + ++T ++D +LGGG G + EI G G GKTQL++ ++
Sbjct: 210 FQARQAQGFSTHVTTFSGELDGVLGGGVPVGGVTEISGPPGVGKTQLLMQLAVSCAMPVE 269
Query: 571 --NLPKCSVYICTEDLFPAKRFNQIMNSIKS 657
+ +++ TE F A+R Q+ + S
Sbjct: 270 FGGMGGACLFVDTEGSFVAERLEQMATAAVS 300
>UniRef50_Q24DN8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 318
Score = 41.1 bits (92), Expect = 0.024
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Frame = +1
Query: 253 LNLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVK-NIVSDHISAKSFTCRELL 429
L L +++ G+S+ + + D+ +L RM +K + + I S +ELL
Sbjct: 15 LQLQNYLEQLGVSNIYQYCLSYEEDLLKLNRMTNKQLNDAQYKISSSFCKTPLQNAKELL 74
Query: 430 VKNCKIST---GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSV--- 591
K + G ++DD+L GG + G + E+ G SGK+ L N KC+
Sbjct: 75 KKQQNLQNLTFGEKELDDLLEGGLQIGKVYELSGYPCSGKSILAQKLISQNF-KCNQKGA 133
Query: 592 -YICTEDLFPAKRFNQIMNSIKSRDQDYGK 678
Y+ + F KRF + M + ++ +++ K
Sbjct: 134 WYLDISNQFNLKRFLK-MYGLNAQKKEFEK 162
>UniRef50_Q12UA7 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 243
Score = 41.1 bits (92), Expect = 0.024
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
++STG +D++L GGF GT N + G+SG+GKT
Sbjct: 9 RVSTGIRGLDEMLKGGFFKGTANVVSGKSGTGKT 42
>UniRef50_A1RYZ3 Cluster: Rad51-like; n=1; Thermofilum pendens Hrk
5|Rep: Rad51-like - Thermofilum pendens (strain Hrk 5)
Length = 315
Score = 41.1 bits (92), Expect = 0.024
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI-HNLPKCS-------VYIC 600
++TG +D++L GG T I E GE GSGKTQL S+ LP VY+
Sbjct: 85 LTTGVKALDELLEGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVVYVD 144
Query: 601 TEDLFPAKRFNQI 639
TE F R +I
Sbjct: 145 TEGTFSPSRIERI 157
>UniRef50_A0B9F0 Cluster: Putative circadian clock protein, KaiC;
n=1; Methanosaeta thermophila PT|Rep: Putative circadian
clock protein, KaiC - Methanosaeta thermophila (strain
DSM 6194 / PT) (Methanothrixthermophila (strain DSM 6194
/ PT))
Length = 248
Score = 41.1 bits (92), Expect = 0.024
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
K K+ +G D+++ GGF GT+N + G SG+GKT
Sbjct: 13 KYTKVGSGIPGFDELVNGGFNKGTVNTVTGGSGTGKT 49
>UniRef50_Q7U4K5 Cluster: Protein recA; n=10; cellular
organisms|Rep: Protein recA - Synechococcus sp. (strain
WH8102)
Length = 375
Score = 41.1 bits (92), Expect = 0.024
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 558
ISTG +D LGGG+ G + EI+G SGKT L L+
Sbjct: 54 ISTGALTLDLALGGGYPKGRVVEIYGPESSGKTTLTLH 91
>UniRef50_P47581 Cluster: Protein recA; n=2; Mycoplasma|Rep: Protein
recA - Mycoplasma genitalium
Length = 340
Score = 41.1 bits (92), Expect = 0.024
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVL--YTSIHNLPKCSVYICTE--- 606
ISTG +D+ LG GG G I E++G SGKT + L S K + YI E
Sbjct: 41 ISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAEGAL 100
Query: 607 DLFPAKRFNQIMNSIKSRDQDYGKN 681
DL AK +N + +G+N
Sbjct: 101 DLAYAKSIGIDLNKLLIAHPRHGEN 125
>UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo
sapiens|Rep: Isoform 4 of O75771 - Homo sapiens (Human)
Length = 283
Score = 40.7 bits (91), Expect = 0.032
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +1
Query: 421 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ 546
EL +STG +D +L G TG + EI G GSGKTQ
Sbjct: 74 ELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQ 115
>UniRef50_Q8SZ30 Cluster: RE19845p; n=2; Sophophora|Rep: RE19845p -
Drosophila melanogaster (Fruit fly)
Length = 270
Score = 40.7 bits (91), Expect = 0.032
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCS 588
KI TG +D GGG G + E+ G SG+GKTQ+ L ++ +PK +
Sbjct: 45 KILTGKKALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAA 94
>UniRef50_Q1JSB1 Cluster: Putative uncharacterized protein; n=1;
Toxoplasma gondii|Rep: Putative uncharacterized protein
- Toxoplasma gondii
Length = 481
Score = 40.7 bits (91), Expect = 0.032
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+++C + GC +D L GG G + EI G++G GKTQ L
Sbjct: 92 LESCPLPVGCRAVDHHLNGGVPRGMLVEISGKAGCGKTQFAL 133
>UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomyces
capsulatus NAm1|Rep: DNA repair protein RAD51 -
Ajellomyces capsulatus NAm1
Length = 297
Score = 40.7 bits (91), Expect = 0.032
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
++ G ++D +L GG TG+I EIFGE +GK+Q+
Sbjct: 76 LAEGSKQLDTLLAGGIETGSITEIFGEFRTGKSQI 110
>UniRef50_Q8G3Y2 Cluster: DNA repair protein radA; n=4;
Bifidobacterium|Rep: DNA repair protein radA -
Bifidobacterium longum
Length = 512
Score = 40.3 bits (90), Expect = 0.043
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 564
++ TG S+ D +LGGG G++ I GE G GK+ L+L T+
Sbjct: 82 RLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQTA 122
>UniRef50_Q89T73 Cluster: Protein recA; n=9; Bacteria|Rep: Protein
recA - Bradyrhizobium japonicum
Length = 506
Score = 40.3 bits (90), Expect = 0.043
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ISTG +DDILGGGF ++ G+ GSGKT L L
Sbjct: 15 RISTGNFGLDDILGGGFDPERMHLFEGQPGSGKTTLAL 52
>UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 381
Score = 40.3 bits (90), Expect = 0.043
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Frame = +1
Query: 376 NIVSDHISAKSFTCRELLVK----NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
N S++++ + +LL++ N I T CS+ID +L GG I EI G G GKT
Sbjct: 37 NNYSNYLNNNGISALDLLIQGRDGNNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKT 96
Query: 544 ----QLVLYTSI----HNLPKCSVYICTEDLFPAKRFNQI 639
QL++ TSI + ++YI TE + +R ++
Sbjct: 97 NMAFQLLVNTSIPFDLGGVQGKAIYIDTEGSYSCQRVREM 136
>UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM15
homolog; n=36; Fungi/Metazoa group|Rep: Meiotic
recombination protein DMC1/LIM15 homolog - Homo sapiens
(Human)
Length = 340
Score = 40.3 bits (90), Expect = 0.043
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
I+TG + D +LGGG + I E FGE +GKTQL
Sbjct: 101 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQL 135
>UniRef50_Q18BZ3 Cluster: ABC transporter, ATP-binding/permease
protein precursor; n=2; Clostridium difficile|Rep: ABC
transporter, ATP-binding/permease protein precursor -
Clostridium difficile (strain 630)
Length = 607
Score = 39.5 bits (88), Expect = 0.075
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 463 KIDDILGGGFRTGTINEIFGESGSGKTQLV-LYTSIHNLPKCSVYICTEDLFPAKR 627
KI D + + GT N I GE+GSGKT ++ L T+ +++ + S+++ +D++ R
Sbjct: 383 KILDNINLKIKAGTSNAIIGETGSGKTTIINLITNFYHIDEGSIFLDGKDIYSINR 438
>UniRef50_Q02AB2 Cluster: RecA domain protein; n=1; Solibacter
usitatus Ellin6076|Rep: RecA domain protein - Solibacter
usitatus (strain Ellin6076)
Length = 248
Score = 39.5 bits (88), Expect = 0.075
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 570
S+G +D+ LGGG G + E +G SG GKT L + + H
Sbjct: 29 SSGFQALDEALGGGLPRGQMVEFYGPSGCGKTTLAIQIAAH 69
>UniRef50_Q30L73 Cluster: Gp72; n=1; Listeria phage P100|Rep: Gp72 -
Listeria phage P100
Length = 414
Score = 39.5 bits (88), Expect = 0.075
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY-TSIHNLPKCSV-YICTEDLF 615
K+ T ++D ILGGG G + EI G++ SGK+ L ++ T + C V +I TE
Sbjct: 37 KLPTFIPQLDYILGGGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTEGTA 96
Query: 616 PAKRFNQI 639
R +Q+
Sbjct: 97 DPSRLSQL 104
>UniRef50_Q1ZXF0 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 354
Score = 39.5 bits (88), Expect = 0.075
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +1
Query: 448 STGCSKIDDILGG-GFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS---VYICTEDLF 615
S+G +D +LGG GF +G I E+ G + GKTQ+ + S++ + + +YI + + F
Sbjct: 90 SSGIKLLDQLLGGNGFTSGEIYELVGNTSCGKTQISMCCSLNLSQQYNSNIIYIDSSNSF 149
Query: 616 PAKRFNQIMNS---IKSRDQDYGK 678
R +I S IK R + K
Sbjct: 150 SPPRLIEIFKSNYLIKQRQKQQQK 173
>UniRef50_Q3SA55 Cluster: ATPase RecA-superfamily; n=1; uncultured
euryarchaeote Alv-FOS4|Rep: ATPase RecA-superfamily -
uncultured euryarchaeote Alv-FOS4
Length = 293
Score = 39.5 bits (88), Expect = 0.075
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTED 609
+ S+G +D ++ GGFR T N I G SG+GKT + +H + + +YI E+
Sbjct: 4 RFSSGIFGLDRLIEGGFRDKTANVIVGSSGTGKTTFAIQFIMHGIENGEQGLYISLEE 61
>UniRef50_Q580V2 Cluster: DNA repair protein, putative; n=1;
Trypanosoma brucei|Rep: DNA repair protein, putative -
Trypanosoma brucei
Length = 477
Score = 39.1 bits (87), Expect = 0.099
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 427 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
LV T + L GGF G + E+ GE+GSGKTQLVL
Sbjct: 166 LVDRLLAGTPSNATGGALEGGFCAGLLTEVHGEAGSGKTQLVL 208
>UniRef50_Q0W872 Cluster: Predicted RecA-family ATPase; n=2;
Euryarchaeota|Rep: Predicted RecA-family ATPase -
Uncultured methanogenic archaeon RC-I
Length = 241
Score = 39.1 bits (87), Expect = 0.099
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTED 609
++STG ++D + GG+ G + G GSGKT + +Y + KC VYI TE+
Sbjct: 3 RVSTGIDELDQFISGGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKC-VYIATEE 60
>UniRef50_A0RYZ3 Cluster: RecA/RadA recombinase related protein;
n=1; Cenarchaeum symbiosum|Rep: RecA/RadA recombinase
related protein - Cenarchaeum symbiosum
Length = 218
Score = 39.1 bits (87), Expect = 0.099
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
I +G ID LGGG R G I +IFG SGK+Q+
Sbjct: 2 IRSGIRGIDGFLGGGLRGGFITDIFGPPASGKSQI 36
>UniRef50_Q00XV2 Cluster: RAD51-like protein 2; n=2;
Ostreococcus|Rep: RAD51-like protein 2 - Ostreococcus
tauri
Length = 570
Score = 38.7 bits (86), Expect = 0.13
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYICTE 606
T C +DD+L GG +G I E G G GKTQ+ + + P+ +VY+ TE
Sbjct: 103 TCCEALDDVLDGGIGSGEITEFCGCPGVGKTQMCTQVCVSASTPEAFGGTDGEAVYVDTE 162
Query: 607 DLFPAKRFNQIMNSI 651
F A R + +++
Sbjct: 163 GSFMADRAMDVASAL 177
>UniRef50_A5HL42 Cluster: DNA primase/helicase; n=1; Phormidium
phage Pf-WMP3|Rep: DNA primase/helicase - Phormidium
phage Pf-WMP3
Length = 682
Score = 38.7 bits (86), Expect = 0.13
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Frame = +1
Query: 325 DIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGT 504
D+ L + S ++ ++++D A T E V TG + ++ +LGGG
Sbjct: 185 DVLSLQKAFSSAERVGVSVLTDDNEA---TVNENEVDEVSYDTGFASLNSMLGGGLHVTE 241
Query: 505 INEIFGESGSGKTQL---VLYT-SIHNLPKCSVYICTEDLF--PAKRFNQI 639
+ + G +G GK+Q V Y + HN +YICTE +RF+QI
Sbjct: 242 LCGLVGHTGRGKSQFAAQVAYNLAEHNEDLKMLYICTEMTHRQMVRRFSQI 292
>UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1
homolog - Leishmania major
Length = 364
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGG-FRTGTINEIFGESGSGKTQL 549
+ISTG + +D +LGGG + +I E FGE +GKTQ+
Sbjct: 125 RISTGSTALDQLLGGGGIESRSITEAFGEFRTGKTQI 161
>UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 237
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 421 ELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
ELL +I +G +D+++GGGF G + + G GSGKT L
Sbjct: 5 ELLKNLDRIPSGVPGLDELIGGGFLPGRVYVVTGPPGSGKTTL 47
>UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 226
Score = 38.7 bits (86), Expect = 0.13
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL---VLYTSIHNLPKCSVYICTED 609
+ TG +D ILGGG G I + G+ G+GKT L +Y + N C + ED
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDED 59
>UniRef50_Q3ADP9 Cluster: Conserved domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: Conserved
domain protein - Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008)
Length = 296
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
++ TG D++LGGG +IN I G GSGKT LV
Sbjct: 3 RLVTGIENFDEVLGGGIPLYSINIIAGNPGSGKTILV 39
>UniRef50_A7KV38 Cluster: RecA; n=1; Bacillus phage 0305phi8-36|Rep:
RecA - Bacillus phage 0305phi8-36
Length = 457
Score = 38.3 bits (85), Expect = 0.17
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 331 KRLTRMHSKDI--QLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGT 504
K+LT+ + I +L+ I S +++ K + T +I+ + GGG G
Sbjct: 17 KKLTKEEKRKIAMKLMDGINKTAGSTAVGFAKDVAKKLTFLPTPSEEINVMTGGGIPRGR 76
Query: 505 INEIFGESGSGKTQLVLYT 561
I EIFG + SGKT L L T
Sbjct: 77 ITEIFGNNSSGKTSLCLET 95
>UniRef50_O58563 Cluster: Putative uncharacterized protein PH0833;
n=4; Pyrococcus|Rep: Putative uncharacterized protein
PH0833 - Pyrococcus horikoshii
Length = 483
Score = 38.3 bits (85), Expect = 0.17
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN 573
KI+TG ++D++L GG G+ I G +G+GKT L+ +I N
Sbjct: 267 KITTGIERLDEMLDGGIYKGSSVLIVGMTGTGKTTFSLHFAIAN 310
>UniRef50_O29483 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 253
Score = 38.3 bits (85), Expect = 0.17
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
+I +G +D+ILGGGF T+N + G G GKT
Sbjct: 4 RIKSGVIGLDEILGGGFIKNTVNAVVGGMGCGKT 37
>UniRef50_UPI0000585DAC Cluster: PREDICTED: similar to RAD51-like 1
(S. cerevisiae), partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51-like 1 (S.
cerevisiae), partial - Strongylocentrotus purpuratus
Length = 128
Score = 37.9 bits (84), Expect = 0.23
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 567
+ T + +D +L GG GTI EI G G GKTQ + S+
Sbjct: 82 LPTSLTTLDQLLQGGLLLGTITEIAGPPGCGKTQFCMMLSV 122
>UniRef50_Q8F261 Cluster: DNA repair protein radA-like protein; n=4;
Leptospira|Rep: DNA repair protein radA-like protein -
Leptospira interrogans
Length = 459
Score = 37.9 bits (84), Expect = 0.23
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 564
++ TG ++D +LGGG G++ I GE G GK+ L+L S
Sbjct: 72 RMGTGLKELDLVLGGGLVPGSLTLIGGEPGVGKSTLILEVS 112
>UniRef50_A0MN30 Cluster: RecA/RadA recombinase; n=1; Thermus phage
phiYS40|Rep: RecA/RadA recombinase - Thermus phage
phiYS40
Length = 339
Score = 37.9 bits (84), Expect = 0.23
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Frame = +1
Query: 370 VKNIVSDHISAKSFTCRELL----VKNCK---ISTGCSKIDDILG-GGFRTGTINEIFGE 525
+K I+S + AK F+ E+ +K K +STG +D LG GG G I E++G+
Sbjct: 6 IKQIISSY--AKKFSKEEIYTGQELKQTKEEIVSTGILTVDLALGIGGIPMGKIIEVYGQ 63
Query: 526 SGSGKT--QLVLYTSIHNLPKCSVYICTEDLF 615
SGKT L+ + + K +I E+ F
Sbjct: 64 ESSGKTTFSLITISQMQKANKICAFIDAENSF 95
>UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:
ENSANGP00000029732 - Anopheles gambiae str. PEST
Length = 290
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 570
T C +D LG G G I E+ G GSGKTQL L +++
Sbjct: 21 TFCRDLDLALGSGIPEGMITELCGPPGSGKTQLCLQLAVN 60
>UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Methanocorpusculum labreanum Z|Rep: RecA-superfamily
ATPase implicated in signal transduction-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 238
Score = 37.9 bits (84), Expect = 0.23
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
I +G +DD++GGGF G++ + GE+G+G+T L
Sbjct: 11 IPSGIPGLDDMIGGGFIKGSVFVLIGETGTGRTMFSL 47
>UniRef50_Q04761 Cluster: Protein recA; n=310; Bacteria|Rep: Protein
recA - Brucella abortus
Length = 361
Score = 37.9 bits (84), Expect = 0.23
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYT 561
+STG +D LG GG G I EI+G SGKT L L+T
Sbjct: 51 VSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHT 90
>UniRef50_O14129 Cluster: DNA repair protein rhp55; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp55
- Schizosaccharomyces pombe (Fission yeast)
Length = 350
Score = 37.9 bits (84), Expect = 0.23
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +1
Query: 466 IDDILGG-GFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFPAKRFNQ 636
+DD GG G + G I+E+ G G GKT L L + + L S +++ T P +R Q
Sbjct: 32 LDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIWVETCQPIPMERLRQ 91
Query: 637 IMNSIKSRDQD 669
++++ QD
Sbjct: 92 LLDNHVPSSQD 102
>UniRef50_Q890L7 Cluster: DNA repair protein radA; n=9;
Clostridiaceae|Rep: DNA repair protein radA -
Clostridium tetani
Length = 465
Score = 37.5 bits (83), Expect = 0.30
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ISTG ++++ +LGGG G++ I G+ G GK+ L+L
Sbjct: 79 RISTGINELNRVLGGGIVRGSLTLISGDPGIGKSTLLL 116
>UniRef50_Q08YR0 Cluster: Putative uncharacterized protein; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Putative
uncharacterized protein - Stigmatella aurantiaca DW4/3-1
Length = 429
Score = 37.5 bits (83), Expect = 0.30
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK 582
V++ +++TG +D +L GG G+ I G +GSGKT L L + L +
Sbjct: 209 VRDARLATGVKGLDTMLQGGVWAGSSTLIEGRTGSGKTTLALQFILEGLKR 259
>UniRef50_Q93YY9 Cluster: RAD51C protein; n=1; Chlamydomonas
reinhardtii|Rep: RAD51C protein - Chlamydomonas
reinhardtii
Length = 352
Score = 37.5 bits (83), Expect = 0.30
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 466 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKC-------SVYICTEDLFPA 621
+D +LGGG G + E G G GKTQL + +++ +P+ +VYI TE F A
Sbjct: 100 LDALLGGGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQAVYIDTEGSFMA 159
Query: 622 KR 627
+R
Sbjct: 160 ER 161
>UniRef50_Q4CYK4 Cluster: DNA repair protein, putative; n=2;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 400
Score = 37.5 bits (83), Expect = 0.30
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH--NLPK------CSVYIC 600
ISTG +D L GG G I EI G +G+GKT L ++ + PK C+++I
Sbjct: 118 ISTGQECLDGALRGGLGCGLITEITGATGAGKTAFALNLAMRAASYPKKDDRKSCTLWIT 177
Query: 601 TE-DLFPA 621
T+ FPA
Sbjct: 178 TDVSAFPA 185
>UniRef50_O27166 Cluster: Conserved protein; n=1;
Methanothermobacter thermautotrophicus str. Delta H|Rep:
Conserved protein - Methanobacterium thermoautotrophicum
Length = 470
Score = 37.5 bits (83), Expect = 0.30
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTEDLF 615
+STG +D++LGGG G+ + G +G+GKT L+ Y S +C ++ E+
Sbjct: 246 VSTGIPTLDEMLGGGVYRGSAVLVSGTTGAGKTSLLSKFAYESCRRGERC-LFFSNEE-- 302
Query: 616 PAKRFNQIMNSI 651
PA + + M SI
Sbjct: 303 PADQIVRNMESI 314
>UniRef50_Q9PR61 Cluster: Protein recA; n=1; Ureaplasma parvum|Rep:
Protein recA - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 334
Score = 37.5 bits (83), Expect = 0.30
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYT 561
ISTG ID I G G G I EI+G SGKT + L T
Sbjct: 39 ISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQT 78
>UniRef50_P38953 Cluster: DNA repair protein RAD55; n=2;
Saccharomyces cerevisiae|Rep: DNA repair protein RAD55 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 406
Score = 37.5 bits (83), Expect = 0.30
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +1
Query: 421 ELLVKNCK-ISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
+L+V++ K +S+G + +D+IL GF+ +I EIFG G GKT
Sbjct: 9 QLIVESPKPLSSGITGLDEILNLGFQARSIYEIFGPPGIGKT 50
>UniRef50_Q948V7 Cluster: Chloroplast DNA recombination protein RECA
precursor; n=2; Chlamydomonas reinhardtii|Rep:
Chloroplast DNA recombination protein RECA precursor -
Chlamydomonas reinhardtii
Length = 414
Score = 37.1 bits (82), Expect = 0.40
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY--TSIHNLPKCSVYICTEDLF 615
+G +D LGGG+ G I E++G SGKT L ++ I L YI E F
Sbjct: 98 SGSLTLDAALGGGYPRGRIIEVYGPEASGKTTLAMHGCGEIQRLGGTVAYIDVEHAF 154
>UniRef50_Q5JQE4 Cluster: OSJNBa0096F01.14 protein; n=6; Oryza
sativa|Rep: OSJNBa0096F01.14 protein - Oryza sativa
(Rice)
Length = 501
Score = 37.1 bits (82), Expect = 0.40
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 427 LVKNCKISTGCSK---IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYI 597
LV+N + + G K + +L T T FG++ G+ Q T++ K S
Sbjct: 158 LVRNIEAAAGGKKPFTLATLLISCTNTFTAKAAFGQACGGELQEQFLTALDEALKFSNGF 217
Query: 598 CTEDLFPAKRFNQIMNSIKSR 660
C DLFP+ RF M ++SR
Sbjct: 218 CFGDLFPSLRFIDAMTGLRSR 238
>UniRef50_Q6CPZ2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 413
Score = 37.1 bits (82), Expect = 0.40
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV--LYTSIHNLPKCSVYICTEDLFP 618
+ +G +DD L GF+ +I E++G G GKT+ L + N KC ++I T P
Sbjct: 18 VRSGIESLDDSLNDGFQPQSIYEVYGPPGIGKTKFAVQLVNNNQNRMKC-LWIDTFQQVP 76
Query: 619 AKRFNQ 636
K Q
Sbjct: 77 LKLIEQ 82
>UniRef50_Q3IN66 Cluster: Probable KaiC-like transcriptional
regulator 1; n=1; Natronomonas pharaonis DSM 2160|Rep:
Probable KaiC-like transcriptional regulator 1 -
Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
Length = 496
Score = 37.1 bits (82), Expect = 0.40
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 558
++TG ++D + GGGF GT I G G GKT + Y
Sbjct: 249 VATGVGELDSLTGGGFEHGTTTFISGPPGVGKTTVGAY 286
>UniRef50_A6G4M7 Cluster: DNA repair protein radA; n=1; Plesiocystis
pacifica SIR-1|Rep: DNA repair protein radA -
Plesiocystis pacifica SIR-1
Length = 473
Score = 36.7 bits (81), Expect = 0.53
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 418 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+E L ++STG +++D +LGGG G++ + G G GK+ L+L
Sbjct: 70 QEQLADAQRLSTGIAELDRVLGGGLVPGSLVLLGGAPGIGKSTLIL 115
>UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1;
Herminiimonas arsenicoxydans|Rep: Putative
uncharacterized protein - Herminiimonas arsenicoxydans
Length = 480
Score = 36.7 bits (81), Expect = 0.53
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+++TG +DD+LGGG + N + G GSGKT L
Sbjct: 9 RLATGVPGLDDLLGGGLPEFSFNLLAGTPGSGKTTL 44
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 403 KSFTCRELLVKNCK-ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
KS T ++ + K +S G +D+++GGG G + G SGSGKT L
Sbjct: 236 KSSTTGDIRISGDKRLSMGVPALDEMMGGGLPAGYSLLLVGPSGSGKTVL 285
>UniRef50_Q6FM82 Cluster: Similar to sp|P38953 Saccharomyces
cerevisiae YDR076w RAD55 DNA repair protein; n=1;
Candida glabrata|Rep: Similar to sp|P38953 Saccharomyces
cerevisiae YDR076w RAD55 DNA repair protein - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 337
Score = 36.7 bits (81), Expect = 0.53
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 421 ELLVKNCK-ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 561
+L+V K ISTG + +D+ L GGFR + EI+G G GKT L T
Sbjct: 9 QLIVNAPKPISTGLTALDNELDGGFRYKSSYEIYGIPGIGKTWLASET 56
>UniRef50_Q0W053 Cluster: Putative ATPase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Putative ATPase -
Uncultured methanogenic archaeon RC-I
Length = 254
Score = 36.7 bits (81), Expect = 0.53
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICT-EDL 612
++ TG +D +L GGF G+ I G GSGKT L L + + + +Y+ T E +
Sbjct: 12 QVKTGVDGLDILLSGGFVKGSTILISGSYGSGKTLLALQYAFYQAQRGDKVLYVSTSEPV 71
Query: 613 FPAKRF 630
F ++F
Sbjct: 72 FKIRQF 77
>UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 370
Score = 36.7 bits (81), Expect = 0.53
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Frame = +1
Query: 256 NLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVK 435
N+F A I + K+ + ++ ++ L + K+I+ + +S+ S + R LL K
Sbjct: 17 NIFAA---RNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEK 73
Query: 436 NCK-------ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ + T +DD L GG G + E+ G G GK+Q +
Sbjct: 74 KVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
>UniRef50_P74646 Cluster: Circadian clock protein kinase kaiC; n=89;
Bacteria|Rep: Circadian clock protein kinase kaiC -
Synechocystis sp. (strain PCC 6803)
Length = 519
Score = 36.7 bits (81), Expect = 0.53
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +1
Query: 436 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
N +IS+G +D++ GGGF +I G +G+GKT LV
Sbjct: 261 NARISSGVQTLDEMCGGGFFKDSIILATGATGTGKTLLV 299
Score = 34.3 bits (75), Expect = 2.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVYICTED 609
KI T D+I GG G + G SG+GKT L LY IH+ ++I E+
Sbjct: 21 KIRTVIEGFDEITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYQGIHHFDYPGLFITFEE 79
>UniRef50_Q05FN0 Cluster: Protein recA; n=1; Candidatus Carsonella
ruddii PV|Rep: Protein recA - Carsonella ruddii (strain
PV)
Length = 296
Score = 36.3 bits (80), Expect = 0.70
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 430 VKNCK-ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKT 543
+KN + ISTG +D ILG GG G I EI+G+ SGKT
Sbjct: 7 LKNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKT 46
>UniRef50_A0XYW8 Cluster: DNA repair protein radA; n=9;
Proteobacteria|Rep: DNA repair protein radA -
Alteromonadales bacterium TW-7
Length = 461
Score = 36.3 bits (80), Expect = 0.70
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
T ++D +L GG TG++N I G+ G+GKT L+
Sbjct: 79 TEIGELDRVLSGGVTTGSVNIISGDPGAGKTTLL 112
>UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Rep:
ORF021 - Staphylococcus phage G1
Length = 418
Score = 36.3 bits (80), Expect = 0.70
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 564
+KN I T + D ILGGG G + E++G +GSGK+ ++ S
Sbjct: 37 IKNV-IPTMVPQYDYILGGGIPLGRLTEVYGLTGSGKSTFAVHLS 80
>UniRef50_Q17EK1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 335
Score = 36.3 bits (80), Expect = 0.70
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +1
Query: 487 GFRTGTINEIFGESGS--------GKTQLVLYTSIHNLPKCSVYICTEDLFPAKRFNQIM 642
G+ + + IFGE G G+ +L T +LPK ++CTE L RF+Q +
Sbjct: 10 GYNSSELVAIFGEQGLAAEYARKIGRYLYLLVTPADDLPKALCWMCTEQLDSFHRFHQKI 69
Query: 643 NSIKSR 660
N I+ R
Sbjct: 70 NEIQQR 75
>UniRef50_Q74ZR1 Cluster: AGR137Wp; n=1; Eremothecium gossypii|Rep:
AGR137Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 503
Score = 36.3 bits (80), Expect = 0.70
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAK 624
++TG ++DD LG G +I E+FG G GKT L N K + + T P
Sbjct: 18 LTTGIPQLDDALGAGLDPRSIYEVFGPPGIGKTLFGLQVIRCNRGKRVLVVDTHKRTPLD 77
Query: 625 R 627
R
Sbjct: 78 R 78
>UniRef50_Q8ZT96 Cluster: Putative uncharacterized protein PAE3364;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE3364 - Pyrobaculum aerophilum
Length = 281
Score = 36.3 bits (80), Expect = 0.70
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
TG ID +L GGFR G I + GE+G GKT
Sbjct: 24 TGIWYIDQLLQGGFRKGEIYLVAGEAGQGKT 54
>UniRef50_O29893 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 238
Score = 36.3 bits (80), Expect = 0.70
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 558
G S++D++LGGG T N I G SG GKT L +
Sbjct: 8 GISRLDELLGGGLDRYTENLIIGRSGIGKTILAAH 42
>UniRef50_A7IAV9 Cluster: HTR-like protein; n=1; Candidatus
Methanoregula boonei 6A8|Rep: HTR-like protein -
Methanoregula boonei (strain 6A8)
Length = 275
Score = 36.3 bits (80), Expect = 0.70
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPA 621
++ TG + +D IL GG GT+ +FG+ G+G + +++++L + L+P
Sbjct: 8 RMPTGIASLDPILDGGVPPGTLTLLFGDIGAGHYEFAYSSTVNSLAEMHRVPGAGILYPK 67
Query: 622 K 624
K
Sbjct: 68 K 68
>UniRef50_A7D6B3 Cluster: KaiC domain protein; n=6; cellular
organisms|Rep: KaiC domain protein - Halorubrum
lacusprofundi ATCC 49239
Length = 499
Score = 36.3 bits (80), Expect = 0.70
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+IS+G + D++L GG GT+ + G +G GKT L
Sbjct: 244 QISSGIPEFDELLHGGIERGTVTVVSGPTGVGKTTL 279
>UniRef50_Q39199 Cluster: DNA repair protein recA homolog 1,
chloroplast precursor; n=155; cellular organisms|Rep:
DNA repair protein recA homolog 1, chloroplast precursor
- Arabidopsis thaliana (Mouse-ear cress)
Length = 439
Score = 36.3 bits (80), Expect = 0.70
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 558
S+G +D LGGG G + EI+G SGKT L L+
Sbjct: 118 SSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALH 154
>UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to
RAD51L2/RAD51C protein; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51L2/RAD51C
protein - Strongylocentrotus purpuratus
Length = 425
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQ 546
I T C ++D++LGGG I EI G G GKTQ
Sbjct: 123 IITFCEELDEMLGGGVPMCKITEICGAPGVGKTQ 156
>UniRef50_Q8ENR4 Cluster: Hypothetical conserved protein; n=1;
Oceanobacillus iheyensis|Rep: Hypothetical conserved
protein - Oceanobacillus iheyensis
Length = 366
Score = 35.9 bits (79), Expect = 0.92
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = -3
Query: 494 RNPPPNISSILEQP--VLILQFFTSNSRHVKLLALI*SDTIFFTNWMSLLCILVSLFISK 321
++PP N+ +++E +L F S +ALI +D+ F ++ LC+L SL+I K
Sbjct: 277 QSPPMNLDNLIEHGGYAPLLSMFYDGSLEGSKVALIATDSGLFLGAIAFLCLLGSLYIFK 336
Query: 320 I-DNIIISLVLDI 285
I N +S ++ +
Sbjct: 337 IKKNAALSFLVSV 349
>UniRef50_Q7NHX9 Cluster: DNA repair protein radA; n=23;
Bacteria|Rep: DNA repair protein radA - Gloeobacter
violaceus
Length = 480
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCSVYICTED 609
++ ++ +G ++D +LGGG G++ I G+ G GK+ L+L T+ + + +Y+ E+
Sbjct: 68 QHSRVPSGFGELDRVLGGGVVPGSLVLIGGDPGIGKSTLLLQTACRLSQAQTVLYVAAEE 127
>UniRef50_Q7MXG3 Cluster: DNA repair protein RadA; n=33;
Bacteria|Rep: DNA repair protein RadA - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 461
Score = 35.9 bits (79), Expect = 0.92
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKC-SVYICTED--- 609
+I G + D +LGGG G + GE G GK+ L+L T + LP+ ++Y+ E+
Sbjct: 73 RIRLGDEEFDRVLGGGIVKGAFVLLGGEPGIGKSTLILQT-VLRLPQLRTLYVSGEESAR 131
Query: 610 --LFPAKRFNQIMN 645
A+R Q MN
Sbjct: 132 QLKMRAERLGQAMN 145
>UniRef50_A0A7C2 Cluster: RecA recombinase; n=1; Cyanophage
Ma-LMM01|Rep: RecA recombinase - Cyanophage Ma-LMM01
Length = 354
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
I +G +D +LGGG+ G I EI GE+ GKT L+
Sbjct: 43 IPSGIFSLDYVLGGGWPVGKIVEIAGETSVGKTTLM 78
>UniRef50_Q7R451 Cluster: GLP_254_31158_29860; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_254_31158_29860 - Giardia lamblia
ATCC 50803
Length = 432
Score = 35.9 bits (79), Expect = 0.92
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 424 LLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 558
L + N K S D +L R I EI GESG+GKT+++LY
Sbjct: 79 LFIPNFKHLKTMSPFDLVLANVIREQHITEIAGESGTGKTRILLY 123
>UniRef50_P43705 Cluster: Protein recA; n=176; root|Rep: Protein
recA - Haemophilus influenzae
Length = 354
Score = 35.9 bits (79), Expect = 0.92
Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVL 555
ISTG +D LG GG G I EIFG SGKT L L
Sbjct: 41 ISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTL 78
>UniRef50_UPI000038E425 Cluster: hypothetical protein Faci_03001859;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001859 - Ferroplasma acidarmanus fer1
Length = 380
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 403 KSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
K+ R + + + S G KID + GG R G + I G++GSGKT L
Sbjct: 101 KAVDYRNYMGLDDRYSFGIHKIDMAISGGLRPGFVYLISGKTGSGKTTL 149
>UniRef50_A6W1I1 Cluster: DNA repair protein RadA; n=66;
Proteobacteria|Rep: DNA repair protein RadA -
Marinomonas sp. MWYL1
Length = 462
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 561
+ S+G ++ D +LGGG G + I G G+GK+ L+L T
Sbjct: 78 RFSSGANEFDRVLGGGLVPGGVVLIGGHPGAGKSTLLLQT 117
>UniRef50_A5NQF2 Cluster: KaiC domain protein; n=1; Methylobacterium
sp. 4-46|Rep: KaiC domain protein - Methylobacterium sp.
4-46
Length = 501
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
++ TG + +D+ILGGG G + + G GSGKT L
Sbjct: 19 RVPTGIAGLDEILGGGLFEGGVYIVQGTPGSGKTIL 54
>UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3;
Cyanobacteria|Rep: DNA repair protein radA - Lyngbya sp.
PCC 8106
Length = 564
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
++S+G ++D +LGGG G++ I GE G GK+ L+L
Sbjct: 86 RMSSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTLLL 123
>UniRef50_A7L3L0 Cluster: Replicative DNA helicase; n=1;
Enterococcus phage F4|Rep: Replicative DNA helicase -
Enterococcus phage F4
Length = 311
Score = 35.5 bits (78), Expect = 1.2
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +1
Query: 466 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSI 567
+ +++GGG+++G + IFG SG GK+ ++L ++
Sbjct: 128 LTELIGGGYQSGNLYTIFGRSGRGKSTVMLVEAL 161
>UniRef50_A7TGZ2 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 422
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
I +G ++D+ L GF++ +I EI+G G GKT+L L
Sbjct: 18 IKSGIEELDECLEDGFQSRSIYEIYGPPGIGKTRLGL 54
>UniRef50_Q8ZYK9 Cluster: Putative uncharacterized protein PAE0729;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE0729 - Pyrobaculum aerophilum
Length = 258
Score = 35.5 bits (78), Expect = 1.2
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKC---SVYICTEDLF 615
+ TG +D I+GGGF G I GE+G+ KT L I K +YI ++ +
Sbjct: 11 VPTGIEGLDTIIGGGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVDETY 70
Query: 616 P-----AKRFNQIMNSIKSR 660
A+RF + +++R
Sbjct: 71 EQFVEGARRFGWDIEDLRAR 90
>UniRef50_Q3IML2 Cluster: Probable KaiC-like transcriptional
regulator 3; n=3; Halobacteriaceae|Rep: Probable
KaiC-like transcriptional regulator 3 - Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678)
Length = 231
Score = 35.5 bits (78), Expect = 1.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
++S+G + DD++ GGF G + + G GSGKT
Sbjct: 2 RVSSGVAGFDDLVAGGFPVGRLYVLSGPPGSGKT 35
>UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DNA repair protein
RAD51C - Entamoeba histolytica HM-1:IMSS
Length = 283
Score = 35.1 bits (77), Expect = 1.6
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1
Query: 418 RELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+E V+N I T +ID L GG G I +I G GSGK+QL +
Sbjct: 33 KEKKVRN--IPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCM 76
>UniRef50_Q6KHJ5 Cluster: Phosphoglycerate kinase; n=10;
Mycoplasma|Rep: Phosphoglycerate kinase - Mycoplasma
mobile
Length = 754
Score = 35.1 bits (77), Expect = 1.6
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Frame = +1
Query: 274 DRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVS-----DHISAKSFTCRELL-VK 435
++ +S+ + IL ++I T + ++KN +S + AK+F +L VK
Sbjct: 358 NKLAVSTYLQGKILPAIEILSKTPSELMNENILKNTISLASTLQNTDAKNFQEETILKVK 417
Query: 436 NCKIS--TGCSKIDDILGG---GFRTGTINEIFGESGSGKT 543
N K+S TG K+ +I+ G + G I GESGSGK+
Sbjct: 418 NLKVSFKTGRKKVINIIRGVDVSVKRGQIIGFVGESGSGKS 458
>UniRef50_Q7D3Y2 Cluster: AGR_pAT_129p; n=4; Rhizobiaceae|Rep:
AGR_pAT_129p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 504
Score = 35.1 bits (77), Expect = 1.6
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
I +G +++D++ GGG GT + G++G+GK+ +
Sbjct: 277 IKSGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTM 311
>UniRef50_Q1IJA5 Cluster: Protein recA; n=1; Acidobacteria bacterium
Ellin345|Rep: Protein recA - Acidobacteria bacterium
(strain Ellin345)
Length = 252
Score = 35.1 bits (77), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+TG + +D + GGG G + E+FG SG+T + L
Sbjct: 35 TTGIAALDRLTGGGLPVGAVCELFGPECSGRTSVAL 70
>UniRef50_A7HJZ5 Cluster: DNA repair protein RadA; n=2;
Thermotogaceae|Rep: DNA repair protein RadA -
Fervidobacterium nodosum Rt17-B1
Length = 465
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 427 LVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
L++ +I TG + ID++L GG G + + GE G GK+ + L
Sbjct: 70 LLEEERIKTGINSIDELLSGGLIKGQVILLGGEPGVGKSTIAL 112
>UniRef50_Q8ZXQ7 Cluster: Putative uncharacterized protein PAE1156;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE1156 - Pyrobaculum aerophilum
Length = 268
Score = 35.1 bits (77), Expect = 1.6
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLF 615
+ISTG +D L GG G+ + GE G GK+ L ++ + L VY+ TE
Sbjct: 3 RISTGVDVLDKALEGGIPQGSWVVVTGEPGVGKSILCIHFAYAGLRAGDPVVYVTTE--- 59
Query: 616 PAKRFNQIMNSIKSRDQDYGK 678
+ F +M K D+ +
Sbjct: 60 --QEFRDVMEQAKQLGMDFSR 78
>UniRef50_Q8RY99 Cluster: DNA repair protein recA homolog 2,
mitochondrial precursor; n=1; Arabidopsis thaliana|Rep:
DNA repair protein recA homolog 2, mitochondrial
precursor - Arabidopsis thaliana (Mouse-ear cress)
Length = 389
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLY 558
ISTG +D LG GG G + E++G+ SGKT L L+
Sbjct: 97 ISTGSLNLDLALGVGGLPKGRMVEVYGKEASGKTTLALH 135
>UniRef50_P24517 Cluster: DNA repair protein radA; n=195;
Bacteria|Rep: DNA repair protein radA - Salmonella
typhimurium
Length = 460
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYT 561
+ STG + D +LGGG G+ I G G+GK+ L+L T
Sbjct: 76 RFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQT 115
>UniRef50_P73860 Cluster: KaiC-like protein 1; n=17; cellular
organisms|Rep: KaiC-like protein 1 - Synechocystis sp.
(strain PCC 6803)
Length = 568
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGG-GFRTGTINEIFGESGSGKTQLVLY 558
+ISTG ++DD+ GG G+ G+ + G +G+GKT L +
Sbjct: 252 RISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAF 291
>UniRef50_UPI00015BAB16 Cluster: putative circadian clock protein,
KaiC; n=1; Ignicoccus hospitalis KIN4/I|Rep: putative
circadian clock protein, KaiC - Ignicoccus hospitalis
KIN4/I
Length = 287
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL--PKCSVYICT 603
V ++ TG DD++ GG G + + GE G+GKT ++ + + + +Y+ T
Sbjct: 19 VTKVRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQKVIYVTT 78
Query: 604 ED 609
E+
Sbjct: 79 EE 80
>UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7;
Proteobacteria|Rep: DNA repair protein radA -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 459
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ S+G + D +LGGG G++ + G+ G+GK+ L+L
Sbjct: 74 RFSSGIGEFDRVLGGGIVPGSVLLLCGDPGAGKSTLLL 111
>UniRef50_Q31D48 Cluster: DNA repair protein RadA; n=5;
Prochlorococcus marinus|Rep: DNA repair protein RadA -
Prochlorococcus marinus (strain MIT 9312)
Length = 449
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 397 SAKSFTCRELLVKNC-KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 564
S K+ E+ K + ++G ++ D +LGGG G++ + GE G GK+ +VL ++
Sbjct: 50 SQKAIPFNEISSKKISRFTSGFNEFDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSA 106
>UniRef50_Q4LDC0 Cluster: Protein recA; n=4; cellular organisms|Rep:
Protein recA - Lactobacillus casei
Length = 158
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLY 558
IS+G ID++LG GG G I E++G SG+T + L+
Sbjct: 5 ISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGETTVALH 43
>UniRef50_Q4E6H0 Cluster: Putative uncharacterized protein; n=1;
Wolbachia endosymbiont of Drosophila simulans|Rep:
Putative uncharacterized protein - Wolbachia
endosymbiont of Drosophila simulans
Length = 156
Score = 34.7 bits (76), Expect = 2.1
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = -3
Query: 542 VFPEPLSPNISLIVPVRNPP-PNISSILEQPVLILQFFTSNSRHVKLLA-LI*SDTIFFT 369
V PE PNIS+I P PP P S PV I+ F++ ++A L + +I+
Sbjct: 49 VLPELSGPNISIIRPFGRPPTPRAESSAIDPVDIVSIFSTGFCFNFIIAPLPNAFSIWLI 108
Query: 368 NWMSLLCILVSLFISK----IDNIIISLVL 291
S C+ SLF+S ID+++I ++L
Sbjct: 109 ALSSAFCL--SLFLSSGLLAIDHLLIYIIL 136
>UniRef50_Q1CXY6 Cluster: Putative uncharacterized protein; n=2;
Cystobacterineae|Rep: Putative uncharacterized protein -
Myxococcus xanthus (strain DK 1622)
Length = 500
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHN 573
+ISTG +D +L GGFR + G GSGKT H+
Sbjct: 11 RISTGIPGLDTVLHGGFRKARTYMLMGLPGSGKTIFANQVCFHH 54
>UniRef50_A5IP72 Cluster: ABC transporter related; n=7;
Staphylococcus aureus|Rep: ABC transporter related -
Staphylococcus aureus subsp. aureus JH9
Length = 240
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1
Query: 490 FRTGTINEIFGESGSGKTQLV-LYTSIHNLPKCSVYICTEDLF 615
FR+G+IN I G +G+GKT L+ + +SI K VY+ +E +F
Sbjct: 25 FRSGSINCIVGVNGAGKTTLLNIISSILMPTKGDVYLNSESIF 67
>UniRef50_A4YT52 Cluster: DNA repair protein radA; n=79;
Proteobacteria|Rep: DNA repair protein radA -
Bradyrhizobium sp. (strain ORS278)
Length = 499
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
++S+G +++D + GGGF G+I + G+ G GK+ L+
Sbjct: 71 RLSSGMTELDRVTGGGFVRGSILLVGGDPGIGKSTLL 107
>UniRef50_A3ZNU6 Cluster: RecA protein; n=1; Blastopirellula marina
DSM 3645|Rep: RecA protein - Blastopirellula marina DSM
3645
Length = 392
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILGG-GFRTGTINEIFGESGSGKTQLVLY 558
I TG +D LGG G G + EIFG SGKT L L+
Sbjct: 77 IPTGSISLDLALGGKGLPRGRVIEIFGPESSGKTTLALH 115
>UniRef50_Q4CZQ5 Cluster: DNA repair protein, putative; n=2;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 393
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 448 STGCSKIDDIL-GGGFRTGTINEIFGESGSGKTQLV 552
STG + ID +L GG GT+ EIFG +GK+ LV
Sbjct: 44 STGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLV 79
>UniRef50_A3LR58 Cluster: ATP-dependent ABC transporter; n=4;
Saccharomycetales|Rep: ATP-dependent ABC transporter -
Pichia stipitis (Yeast)
Length = 1271
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 472 DILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVY 594
D + F +N I G SGSGKT L+ Y S + LPK + Y
Sbjct: 710 DNVSASFAASEVNVIMGPSGSGKTTLLNYLS-NRLPKSTSY 749
>UniRef50_Q4JB87 Cluster: Conserved protein; n=7; Thermoprotei|Rep:
Conserved protein - Sulfolobus acidocaldarius
Length = 261
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTED 609
++STG + D ++ GG G + GE G+GKT L+ L + + VY+ TE+
Sbjct: 3 RLSTGIYEFDKLIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEE 60
>UniRef50_Q2FNQ2 Cluster: Putative circadian clock protein, KaiC;
n=2; Methanomicrobiales|Rep: Putative circadian clock
protein, KaiC - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 237
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY 558
G +D++L GG GT++ I G G+GKT Y
Sbjct: 14 GIKGLDEMLSGGLIEGTVSSIIGAYGTGKTNFAQY 48
>UniRef50_O50248 Cluster: DNA repair and recombination protein radB;
n=6; Methanococcales|Rep: DNA repair and recombination
protein radB - Methanococcus maripaludis
Length = 216
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 466 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTEDLFPAKRFNQI 639
++++L G TI +I+G G GKT + + + + + K VYI TE +R Q+
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQL 61
>UniRef50_P65954 Cluster: DNA repair protein radA homolog; n=43;
Actinobacteria (class)|Rep: DNA repair protein radA
homolog - Mycobacterium bovis
Length = 480
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
TG ++D +LGGG G++ + G+ G GK+ L+L
Sbjct: 72 TGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLL 106
>UniRef50_O66827 Cluster: DNA repair protein radA homolog; n=1;
Aquifex aeolicus|Rep: DNA repair protein radA homolog -
Aquifex aeolicus
Length = 444
Score = 34.7 bits (76), Expect = 2.1
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS 564
+TG +D+ LGGG G + I GE G GK+ L+L S
Sbjct: 67 TTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQIS 105
>UniRef50_Q48N05 Cluster: Circadian oscillation regulator KaiC
homolog; n=12; Proteobacteria|Rep: Circadian oscillation
regulator KaiC homolog - Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6)
Length = 515
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV---LYTSIHNLPKCSVY 594
+ +G ++DD+L GG GT + G +GSGKT + L + KC++Y
Sbjct: 267 VPSGVKELDDLLVGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIY 319
>UniRef50_Q1DEE6 Cluster: Putative uncharacterized protein; n=1;
Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
protein - Myxococcus xanthus (strain DK 1622)
Length = 491
Score = 34.3 bits (75), Expect = 2.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
++ ++STG +D +LGGG + + GE G+GKT
Sbjct: 10 QDARVSTGVPGLDAVLGGGLVSSGVYIFVGEPGAGKT 46
>UniRef50_Q0AUE9 Cluster: DNA repair protein RadA; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA repair protein RadA - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 451
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ S+G S+ D +LGGG G++ + G+ G GK+ L+L
Sbjct: 65 RFSSGLSEFDRVLGGGIVPGSLILLGGDPGIGKSTLLL 102
>UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
RecA-superfamily ATPase implicated in signal
transduction-like protein - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 214
Score = 34.3 bits (75), Expect = 2.8
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
VK K G +D++L GG GTI I G +G+GKT L
Sbjct: 136 VKAEKKGFGIRDLDEMLNGGLPEGTITIISGGTGTGKTTFAL 177
>UniRef50_A4VM13 Cluster: RecA-superfamily ATPase implicated in
signal transduction; n=1; Pseudomonas stutzeri
A1501|Rep: RecA-superfamily ATPase implicated in signal
transduction - Pseudomonas stutzeri (strain A1501)
Length = 470
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ TG +D+ LGGGF + + G SG+GKT L
Sbjct: 242 LPTGIGGLDEALGGGFIERSATLVIGPSGAGKTTFAL 278
>UniRef50_A3EUB1 Cluster: DNA repair protein radA; n=1;
Leptospirillum sp. Group II UBA|Rep: DNA repair protein
radA - Leptospirillum sp. Group II UBA
Length = 461
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 570
+ S+G + D +LGGGF G+ + G+ G GK+ L L H
Sbjct: 72 RTSSGFREFDRVLGGGFVRGSFILLGGDPGVGKSTLALQAVAH 114
>UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 -
Burkholderia phytofirmans PsJN
Length = 531
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNL 576
+ TG +D+ILGGG G + + G +G+GKT L H +
Sbjct: 54 VETGVPGLDEILGGGLVRGGVYLLEGMAGAGKTILSSQIGFHRV 97
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 466 IDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+D +LGGGF G+ + G SG GKT L L
Sbjct: 295 LDGLLGGGFAQGSTTTLVGPSGVGKTLLCL 324
>UniRef50_Q389E0 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 379
Score = 34.3 bits (75), Expect = 2.8
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 448 STGCSKIDDIL-GGGFRTGTINEIFGESGSGKTQLV 552
STG ++D +L GG GT+ E+FG GK++LV
Sbjct: 34 STGSEELDRLLPDGGMTCGTVLEVFGPPSGGKSRLV 69
>UniRef50_Q0W7M9 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 279
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPK 582
K+ TG + D ++ GGF G+ + GE G+G + V Y+S L K
Sbjct: 7 KVPTGITSFDPVIKGGFPAGSFVLLLGEVGAGSQEFV-YSSALMLSK 52
>UniRef50_Q0W7M6 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 289
Score = 34.3 bits (75), Expect = 2.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTED 609
K+ TG +D +L GGF + + G +G+GKT + L L S +YI E+
Sbjct: 3 KLKTGILGLDSLLDGGFNEHSATILVGSAGTGKTTMALQFLRKGLENGSDAIYITLEE 60
>UniRef50_Q2CB22 Cluster: Protein recA; n=5; Proteobacteria|Rep:
Protein recA - Oceanicola granulosus HTCC2516
Length = 504
Score = 33.9 bits (74), Expect = 3.7
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
++TG ++D +LGGG GT + G +G GKT V+
Sbjct: 252 VTTGLPRLDKLLGGGLVPGTNALLTGPAGVGKTTTVV 288
>UniRef50_Q034K4 Cluster: Protein recA; n=5; Bacteria|Rep: Protein
recA - Lactobacillus casei (strain ATCC 334)
Length = 397
Score = 33.9 bits (74), Expect = 3.7
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLYT 561
+STG +D LG GG G I E++G +GKT + L T
Sbjct: 53 VSTGILSLDLALGVGGLPRGRIVEVYGPESTGKTTIALQT 92
>UniRef50_A7AB26 Cluster: Putative uncharacterized protein; n=1;
Parabacteroides merdae ATCC 43184|Rep: Putative
uncharacterized protein - Parabacteroides merdae ATCC
43184
Length = 455
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 358 DIQLVKNIVSDHISAKSFTCRELLVK--NCKISTGCSKIDDILGGGFRTGTINEIFGESG 531
D+++ + + + A+SF +E K + ++ TG ++DD+ GG +R G + + G
Sbjct: 156 DVRMAAEVARE-VLARSFRNQEAREKGEHIQVRTGFDELDDLTGGLYR-GELAVLSGRPS 213
Query: 532 SGKTQLVLYTSI 567
GKT + L+ ++
Sbjct: 214 MGKTAVALHMAL 225
>UniRef50_Q8PXX7 Cluster: Putative DNA
integration/recombination/invertion protein; n=1;
Methanosarcina mazei|Rep: Putative DNA
integration/recombination/invertion protein -
Methanosarcina mazei (Methanosarcina frisia)
Length = 101
Score = 33.9 bits (74), Expect = 3.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
K TG S +DDI GG G ++G +GSGK + +
Sbjct: 16 KTPTGISGLDDITYGGLPEGRTTLVYGSAGSGKILMAM 53
>UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 301
Score = 33.9 bits (74), Expect = 3.7
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
++STG + +DD+L GG G+ + G G+GKT L +
Sbjct: 61 RVSTGVAGLDDMLEGGVPKGSSVIVTGPPGTGKTTLCM 98
>UniRef50_Q0W7N5 Cluster: Predicted ATPase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Predicted ATPase -
Uncultured methanogenic archaeon RC-I
Length = 491
Score = 33.9 bits (74), Expect = 3.7
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAK 624
++TG +D++L GG G+ + G G+GKT L L + ++ + + P
Sbjct: 18 VTTGIEGLDELLCGGLPKGSTVLLSGPPGAGKTVLALQYAFYHASRGERVLFVSTCEPLY 77
Query: 625 RFNQIMNSIKSRDQD 669
+ N+ +S+ + D
Sbjct: 78 KVNRYASSLSFYNLD 92
>UniRef50_Q0W7M8 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 231
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLP--KCSVYICTED 609
+STG +D++L GGF + + G G+GK+ L L ++ L + SVY+ E+
Sbjct: 4 LSTGVQGLDELLQGGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSVYMSLEE 60
>UniRef50_A3DM91 Cluster: NADH/Ubiquinone/plastoquinone (Complex I)
precursor; n=1; Staphylothermus marinus F1|Rep:
NADH/Ubiquinone/plastoquinone (Complex I) precursor -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 532
Score = 33.9 bits (74), Expect = 3.7
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = -3
Query: 446 ILQFFTSNSRHVKLLALI*SDTIFFTNWMSLLCILVSLFISKIDNIIISLVLDIPA 279
+L SN R L A I S+T+F N + L ILV L+I +NII+ L PA
Sbjct: 27 LLSSLLSNKR--SLFAFIYSETVFLIN--AFLTILVYLYIHGTNNIIVYLFAGFPA 78
>UniRef50_A1RXK0 Cluster: Putative circadian clock protein, KaiC;
n=1; Thermofilum pendens Hrk 5|Rep: Putative circadian
clock protein, KaiC - Thermofilum pendens (strain Hrk 5)
Length = 364
Score = 33.9 bits (74), Expect = 3.7
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKT----QLVLYTSIHNLPKCSVYICTEDLFP 618
TG +D+IL GGF G + GE+G GKT Q ++ +++ P +YI ++ P
Sbjct: 120 TGIPGLDEILAGGFLRGKTYLVAGEAGCGKTIFSIQFLINGALNGEP--GLYIAIDE--P 175
Query: 619 AKRFNQIMNSIKSRDQDYG 675
NQ++ +K D G
Sbjct: 176 T---NQLLRGLKLFGWDLG 191
>UniRef50_Q8EVC7 Cluster: Protein recA; n=2; Mycoplasma|Rep: Protein
recA - Mycoplasma penetrans
Length = 329
Score = 33.9 bits (74), Expect = 3.7
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 355 KDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILG-GGFRTGTINEIFGESG 531
K ++L + ++F+ E N I +G +D+ +G GG+ G I EI+G
Sbjct: 8 KALELAIKEIEKKFGKETFSQSESF-DNQVIKSGSILLDNAIGVGGYPKGKIIEIYGNES 66
Query: 532 SGKTQLVL 555
SGKT + L
Sbjct: 67 SGKTTIAL 74
>UniRef50_Q8G4G9 Cluster: Protein recA; n=1571; root|Rep: Protein
recA - Bifidobacterium longum
Length = 397
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 445 ISTGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLY 558
I TG +D LG GG G I EI+G SGKT L L+
Sbjct: 57 IPTGSLALDMALGIGGLPKGRIVEIYGPESSGKTTLALH 95
>UniRef50_Q9ZUP2 Cluster: DNA repair protein recA homolog 3; n=11;
cellular organisms|Rep: DNA repair protein recA homolog
3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 376
Score = 33.9 bits (74), Expect = 3.7
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 448 STGCSKIDDILG-GGFRTGTINEIFGESGSGKTQLVLY 558
STG +D LG GG G + EI+G SGKT L L+
Sbjct: 40 STGSFALDVALGVGGLPKGRVVEIYGPEASGKTTLALH 77
>UniRef50_O83985 Cluster: DNA repair protein radA homolog; n=3;
Bacteria|Rep: DNA repair protein radA homolog -
Treponema pallidum
Length = 455
Score = 33.9 bits (74), Expect = 3.7
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 346 MHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGE 525
+ S D++ VK S + A C +IS G ++ D +LGGG + I GE
Sbjct: 40 LSSGDVRAVKKASSSPVQAFPL-CAVRAQDAQRISCGIAEFDRVLGGGAVRRSAIMIGGE 98
Query: 526 SGSGKTQLVL 555
G GK+ L+L
Sbjct: 99 PGIGKSTLLL 108
>UniRef50_UPI0000DB79CA Cluster: PREDICTED: similar to Mediator
complex subunit 1 CG7162-PA; n=1; Apis mellifera|Rep:
PREDICTED: similar to Mediator complex subunit 1
CG7162-PA - Apis mellifera
Length = 1811
Score = 33.5 bits (73), Expect = 4.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 533 EPLSPNISLIVPVRNPPPNISSILEQPVLILQFFTSNSRHVKLLALI 393
+PLS +S+ + PPN+SS P L+ F+ + H LAL+
Sbjct: 889 DPLSKPVSVSIKPTESPPNMSSRPSSPATTLRKFSPSPTHTSPLALV 935
>UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4;
Deinococci|Rep: DNA repair protein radA - Deinococcus
radiodurans
Length = 503
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+G ++D +LGGG G + I GE G GK+ L+L
Sbjct: 134 SGIPELDRVLGGGLVAGGVTLIGGEPGIGKSTLLL 168
>UniRef50_Q67LV6 Cluster: Protein recA; n=1; Symbiobacterium
thermophilum|Rep: Protein recA - Symbiobacterium
thermophilum
Length = 466
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 436 NCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
+ ++STG +D +LGGG + + G G+GKT L
Sbjct: 2 HARLSTGVEGLDSVLGGGLFPASATLVRGAPGTGKTTL 39
>UniRef50_Q3F0X4 Cluster: RecA protein; n=1; Bacillus thuringiensis
serovar israelensis ATCC 35646|Rep: RecA protein -
Bacillus thuringiensis serovar israelensis ATCC 35646
Length = 362
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 448 STGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
S+G +D LGGG G I E FG S +GKT L+
Sbjct: 33 SSGSLTMDLALGGGVANGRIIEYFGNSMAGKTTLM 67
>UniRef50_Q1QT32 Cluster: Putative circadian clock protein, KaiC;
n=1; Chromohalobacter salexigens DSM 3043|Rep: Putative
circadian clock protein, KaiC - Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 483
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
++ G ++D + GGG GT+ I G +G GKT L L
Sbjct: 240 ELPCGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGL 277
>UniRef50_Q0AB05 Cluster: Putative circadian clock protein, KaiC;
n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: Putative
circadian clock protein, KaiC - Alkalilimnicola
ehrlichei (strain MLHE-1)
Length = 492
Score = 33.5 bits (73), Expect = 4.9
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKT---QLVLYTSIHNLPKCSVYICTEDL 612
+G + D++L GG GTI I G SG GK+ ++ + H+ + SV+ E+L
Sbjct: 258 SGNAAFDEMLHGGLENGTITLITGPSGIGKSTVAAMIAAAAAHDGHRASVFQFEEEL 314
>UniRef50_Q097S5 Cluster: Putative uncharacterized protein; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Putative
uncharacterized protein - Stigmatella aurantiaca DW4/3-1
Length = 468
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH 570
G ++D +L GG + G+ I G SGSGKT L L H
Sbjct: 214 GVPELDGMLRGGLQRGSATLIMGPSGSGKTLLGLQFLSH 252
>UniRef50_A6NUV1 Cluster: DNA repair protein radA; n=1; Bacteroides
capillosus ATCC 29799|Rep: DNA repair protein radA -
Bacteroides capillosus ATCC 29799
Length = 460
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+ TG S++D +LGGG G++ + G G GK+ L+L
Sbjct: 77 RFETGMSELDRVLGGGAVKGSLVLVGGAPGIGKSTLML 114
>UniRef50_A4KR69 Cluster: Hypothetical membrane protein; n=11;
Francisella tularensis|Rep: Hypothetical membrane
protein - Francisella tularensis subsp. holarctica 257
Length = 419
Score = 33.5 bits (73), Expect = 4.9
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Frame = -3
Query: 380 IFFTNWMSLLCILVSLFI-SKIDNIIISL-VLDIPALSIASNKFNGKILFKYMFF 222
IFF L +LV+L + S ++ +I+ L ++ + +++ +NK NGK L KY++F
Sbjct: 208 IFFIFAFILFYLLVNLNVFSSLNLVILPLSLIYLHVITVTNNKENGKNLLKYIYF 262
>UniRef50_A0VKZ0 Cluster: DnaB-like helicase-like; n=1; Delftia
acidovorans SPH-1|Rep: DnaB-like helicase-like - Delftia
acidovorans SPH-1
Length = 454
Score = 33.5 bits (73), Expect = 4.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
KN I+TG +D +L GG R G + I GKT L L
Sbjct: 173 KNPAIATGIGGLDKLLNGGMRRGEVMVIGARPKHGKTALAL 213
>UniRef50_A0L497 Cluster: DNA repair protein RadA; n=6;
Bacteria|Rep: DNA repair protein RadA - Magnetococcus
sp. (strain MC-1)
Length = 452
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
+I G S++D +LGGG +G I G+ G GK+ L++
Sbjct: 69 RIQIGISELDRVLGGGLVSGAAILIGGDPGIGKSTLLM 106
>UniRef50_Q9V040 Cluster: RecA family AAA ATPase; n=5;
Thermococcaceae|Rep: RecA family AAA ATPase - Pyrococcus
abyssi
Length = 240
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKT 543
+ISTG +D+++ GG G + I G GSGKT
Sbjct: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKT 40
>UniRef50_UPI000050F9DD Cluster: COG3638: ABC-type
phosphate/phosphonate transport system, ATPase
component; n=1; Brevibacterium linens BL2|Rep: COG3638:
ABC-type phosphate/phosphonate transport system, ATPase
component - Brevibacterium linens BL2
Length = 293
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLY-TSIHNLPKCSVYICTEDL 612
G +DD+ GFRTG + + G SGSGK+ L+ + +H+ +V + +D+
Sbjct: 27 GVLGLDDV-NVGFRTGRVTVLLGLSGSGKSTLLRHINGLHSPTSGTVRVLGQDV 79
>UniRef50_Q5PBN4 Cluster: DNA repair protein radA; n=7;
Anaplasmataceae|Rep: DNA repair protein radA - Anaplasma
marginale (strain St. Maries)
Length = 456
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL--YTSIHNLPKCSVYICTED 609
++ G ++D +LGGG G+ I GE G GK+ L+L + S+ +Y+ E+
Sbjct: 73 RLCVGNDELDRVLGGGIVAGSSILIGGEPGIGKSTLMLQVFASLAGQSHSCLYVSGEE 130
>UniRef50_Q4JXK0 Cluster: DNA repair protein RadA; n=1;
Corynebacterium jeikeium K411|Rep: DNA repair protein
RadA - Corynebacterium jeikeium (strain K411)
Length = 454
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 451 TGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVL 555
TG ++D +LGGG G+ + GE G GK+ L+L
Sbjct: 72 TGIGELDRVLGGGIVPGSAVLLAGEPGVGKSTLLL 106
>UniRef50_Q5ULN8 Cluster: Orf76; n=1; Lactobacillus phage LP65|Rep:
Orf76 - Lactobacillus phage LP65
Length = 496
Score = 33.1 bits (72), Expect = 6.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
+I +G S +D L GG + G I I G SG GKT ++
Sbjct: 185 RIKSGLSTLDIALKGGLQPGEIGLICGASGFGKTAIL 221
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,401,614
Number of Sequences: 1657284
Number of extensions: 12147455
Number of successful extensions: 32283
Number of sequences better than 10.0: 267
Number of HSP's better than 10.0 without gapping: 31034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32255
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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