Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J02
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 57 2e-09
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 43 5e-05
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 42 8e-05
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 38 0.001
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 27 3.3
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.4
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 4.4
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 7.7
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 7.7
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 57.2 bits (132), Expect = 2e-09
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Frame = +1
Query: 283 GISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCS 462
G ST +++ L I +++R R H +L++ I + + C V + ++TG
Sbjct: 23 GEVSTVDLLTLDITELER--RTHCSQSELLQLIEQISLLLQPVRCSASKVTSKYLTTGDV 80
Query: 463 KIDDILGGGFRTGTINEIFGESGSGKTQ--------LVLYTSIHNLPKCSVYICTEDLFP 618
K+D+ L GG G + EI GESGSGK+Q + L S+ + K +V+I TE
Sbjct: 81 KLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLE 140
Query: 619 AKRFNQIMNSIKSR 660
KR ++ + R
Sbjct: 141 TKRLFELARYLPER 154
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 42.7 bits (96), Expect = 5e-05
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +1
Query: 271 IDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCK-- 444
+ +AG+ + + + + + + ++ + +K S A T E+ K
Sbjct: 34 LKQAGVCTVQGVHMSTKRFLLKIKGFSEAKVDKLKEAASKMCPANFSTAMEISQNRKKVW 93
Query: 445 -ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
ISTG ++ ILGGG ++ +I E+FGE GKTQ+
Sbjct: 94 SISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQM 129
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.9 bits (94), Expect = 8e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
I+TG ++D +L GG TG+I E+FGE +GK+Q+
Sbjct: 124 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQI 158
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +1
Query: 466 IDDILGG-GFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS--VYICTEDLFPAKRFNQ 636
+DD GG G + G I+E+ G G GKT L L + + L S +++ T P +R Q
Sbjct: 32 LDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIWVETCQPIPMERLRQ 91
Query: 637 IMNSIKSRDQD 669
++++ QD
Sbjct: 92 LLDNHVPSSQD 102
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 466 IDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCS 588
I+ +L G GT+ I G S SGKT+L+ + + + L + S
Sbjct: 31 IEKVLYSGSVNGTLLVIEGNSCSGKTELLYHLASNVLLRSS 71
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +1
Query: 223 KNMYLKRILPLNLFEAIDRAGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVS---DH 393
KN+ L PL+ F + I+ +I+ S L + + +S L+ N V+ DH
Sbjct: 173 KNILLPEQSPLSNFSTTKISSINVPSDILDFSNLSSNEIPKDYSSSTALLNNTVAVKQDH 232
Query: 394 -ISAKSFTCRELLVKNCKISTGCSKI 468
+SA +F + + + S CS I
Sbjct: 233 KLSANTFLSSPVKLIE-RESNSCSTI 257
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 502 TINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKRFNQIMNSIKSRDQ 666
++ IF E GKT L T + + K Y D++ I+N +K +D+
Sbjct: 379 SLKNIFEEDNLGKTSLKCVTILSRMFKQRNYDVLPDVYDLFLSVNILNDMKIKDE 433
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 301 EIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNCKISTGCSKIDDIL 480
E +L +D+K R+ S+D+ L+ I +S+ S T + L++ +I+ C + D L
Sbjct: 378 EKKLLHDVDLKDYFRVISRDLLLLLGINDVPVSSLSATLADRLLRQ-RIAESCIEASDTL 436
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 322 LDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCREL 426
+DI TR+H++D +L + + SD + EL
Sbjct: 932 MDILDSTRIHNEDYELARKMASDALELDEEDIEEL 966
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 475 ILGGGFRTGTINEIFGESGSGKT 543
I GGF I + GE+G+GKT
Sbjct: 367 IKSGGFSDAEIIVLLGENGTGKT 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,282
Number of Sequences: 5004
Number of extensions: 56818
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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