Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J02
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15) 62 5e-10
SB_19030| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 31 1.1
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30) 30 1.5
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05) 28 6.1
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
Length = 443
Score = 61.7 bits (143), Expect = 5e-10
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Frame = +1
Query: 280 AGISSTKEIMILSILDIKRLTRMHSKDIQLVKNIVSDHISAKSFTCRELLVKNC-----K 444
A ISS +++ +S D++R T++ D+QL++ +VS I + ++C +
Sbjct: 142 ARISSMHQVICMSAADLERSTKLSITDVQLLQQVVSAVIPRPPMQSALEMYQDCLSGGRR 201
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAK 624
+S GC +D +L GG I EI GES SG ++YI TED+FP+K
Sbjct: 202 VSVGCPVLDKVLKGGLLCHGITEITGESASG----------------ALYISTEDVFPSK 245
Query: 625 RFNQIM 642
R +Q++
Sbjct: 246 RLHQLI 251
>SB_19030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Frame = +1
Query: 454 GCSKIDDILGGGFRTGTINEIFGESGSGKTQ--LVLYTSIH-NLPKCSVYICTEDLFPAK 624
GC D++L GG +G I E+ G +GSGKTQ + + +S+ NL K ++YI T F ++
Sbjct: 18 GCDNWDELLDGGLYSGEITELVGAAGSGKTQACMSIASSVTLNLEKNALYIDTGGAFSSQ 77
Query: 625 RFNQIM 642
R +I+
Sbjct: 78 RVQEII 83
>SB_43381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Frame = +1
Query: 445 ISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLP--------KCSVYI 597
I+T ++D +L GG TG+I E+FGE +GKTQL ++ LP KC +YI
Sbjct: 101 ITTDTKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDHGGAEGKC-LYI 159
Query: 598 CTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
TE F +R + Q+ NV
Sbjct: 160 DTEGTFRPERLLAVAERYGLNGQEVLDNV 188
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = -3
Query: 446 ILQFFTSNSRHVKLLALI*SDTIFFTNWMSLLCILVSLFISKIDNIIISL 297
+LQF+ S+S+++ L L + + WMS++CI +++ +S+ + + +
Sbjct: 1684 LLQFY-SDSQYIATLRLDILTVLLVSLWMSIICISMTIVVSQSTSFVCEI 1732
>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
Length = 300
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 434 FTSNSRHVKLLALI*SDTIFFTNWMSLLCILVSLFI 327
+ S R +KLL L+ T+FFT WM+ LC+ LFI
Sbjct: 207 YRSRKRLIKLLILM--TTLFFTCWMA-LCVQQVLFI 239
>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 514 IFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLF 615
I G GSGKT LVL + C++ + T D+F
Sbjct: 28 IGGPVGSGKTALVLALCKYLRDSCNICVVTNDIF 61
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
KN +S +I + G R G + + G SGSGKT L+
Sbjct: 13 KNIGVSINGREILKTINGKVRPGEMLALMGPSGSGKTTLL 52
>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
Length = 406
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 478 LGGGFRTGTINEIFGESGSGKTQLVLYTSIHNLPKCSVYICTEDLFPAKRFNQI 639
+GG ++ + + G+ G+ + ++ +LP C+ +C E L + N I
Sbjct: 3 VGGAYKFPEFHTLLGDEGACPVCIEVFVEPKSLPSCAHNVCRECLEKITKRNSI 56
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +1
Query: 373 KNIVSDHISAKSFT-CRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
K + H+S T C ++ V++ + G + D + G R ++N G S G T
Sbjct: 2514 KGSLGIHVSGGVGTNCIDVTVRHV-VPLGVAAKDGRIRKGDRVLSVN---GRSTKGLTHQ 2569
Query: 550 VLYTSIHNLPKCSVYICTEDLFPAKR 627
+ + NLP+ V + + FP KR
Sbjct: 2570 EVLNLLQNLPRRVVLVVSRSNFPRKR 2595
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,127,975
Number of Sequences: 59808
Number of extensions: 379109
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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