Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_J02
(685 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069531-1|AAC42663.1| 341|Drosophila melanogaster spindle B pr... 58 1e-08
AE014297-1844|AAF55050.1| 341|Drosophila melanogaster CG3325-PA... 58 1e-08
AY070920-1|AAL48542.1| 341|Drosophila melanogaster RE02671p pro... 57 3e-08
L41342-1|AAA64873.1| 336|Drosophila melanogaster protein ( Dros... 53 3e-07
D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein h... 53 3e-07
D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein. 53 3e-07
BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p pro... 53 3e-07
AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB... 53 3e-07
AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA... 53 3e-07
AY257540-1|AAP13056.1| 270|Drosophila melanogaster spindle D pr... 41 0.002
AY071162-1|AAL48784.1| 270|Drosophila melanogaster RE19845p pro... 41 0.002
AE014297-4083|AAN14399.1| 270|Drosophila melanogaster CG31069-P... 41 0.002
AY075521-1|AAL68329.1| 623|Drosophila melanogaster RE70153p pro... 31 1.1
AE014296-1994|AAF50035.2| 623|Drosophila melanogaster CG32091-P... 31 1.1
AY069801-1|AAL39946.1| 766|Drosophila melanogaster SD03967p pro... 30 3.4
AE014134-294|AAN10460.1| 766|Drosophila melanogaster CG17646-PB... 30 3.4
AE014134-293|AAF51341.3| 766|Drosophila melanogaster CG17646-PA... 30 3.4
AY075278-1|AAL68145.1| 204|Drosophila melanogaster AT30094p pro... 29 4.5
AE014134-1795|AAN10729.1| 204|Drosophila melanogaster CG31717-P... 29 4.5
>AF069531-1|AAC42663.1| 341|Drosophila melanogaster spindle B
protein.
Length = 341
Score = 58.0 bits (134), Expect = 1e-08
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--------IHNLPKC 585
V+ ++S GCS +D GGG T I E+ G +G GKTQL+L S + L K
Sbjct: 83 VRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKG 142
Query: 586 SVYICTEDLFPAKRFNQIMNSIKSRDQDYGKN 681
YICTE FPA+R Q+ + + R + N
Sbjct: 143 VAYICTESSFPARRLLQMSKACEKRHPEMELN 174
>AE014297-1844|AAF55050.1| 341|Drosophila melanogaster CG3325-PA
protein.
Length = 341
Score = 58.0 bits (134), Expect = 1e-08
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--------IHNLPKC 585
V+ ++S GCS +D GGG T I E+ G +G GKTQL+L S + L K
Sbjct: 83 VRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKG 142
Query: 586 SVYICTEDLFPAKRFNQIMNSIKSRDQDYGKN 681
YICTE FPA+R Q+ + + R + N
Sbjct: 143 VAYICTESSFPARRLLQMSKACEKRHPEMELN 174
>AY070920-1|AAL48542.1| 341|Drosophila melanogaster RE02671p
protein.
Length = 341
Score = 56.8 bits (131), Expect = 3e-08
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 430 VKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTS--------IHNLPKC 585
V+ ++S GCS +D GGG T I E+ G +G GKT+L+L S + L K
Sbjct: 83 VRWSRVSFGCSALDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKG 142
Query: 586 SVYICTEDLFPAKRFNQIMNSIKSRDQDYGKN 681
YICTE FPA+R Q+ + + R + N
Sbjct: 143 VAYICTESSFPARRLLQMSKACEKRHPEMELN 174
>L41342-1|AAA64873.1| 336|Drosophila melanogaster protein (
Drosophila melanogaster(clone pDmR2210) RAD51 homolog
gene, complete cds. ).
Length = 336
Score = 53.2 bits (122), Expect = 3e-07
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 84 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 141
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 142 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 186
>D37788-1|BAA07039.1| 336|Drosophila melanogaster RecA protein
homologue protein.
Length = 336
Score = 53.2 bits (122), Expect = 3e-07
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 84 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 141
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 142 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 186
>D17726-1|BAA04580.1| 336|Drosophila melanogaster Rad51 protein.
Length = 336
Score = 53.2 bits (122), Expect = 3e-07
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 84 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 141
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 142 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 186
>BT001791-1|AAN71546.1| 284|Drosophila melanogaster RH24133p
protein.
Length = 284
Score = 53.2 bits (122), Expect = 3e-07
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 27 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 84
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 85 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 129
>AE014297-4533|AAN14213.1| 279|Drosophila melanogaster CG7948-PB,
isoform B protein.
Length = 279
Score = 53.2 bits (122), Expect = 3e-07
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 27 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 84
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 85 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 129
>AE014297-4532|AAF57005.1| 336|Drosophila melanogaster CG7948-PA,
isoform A protein.
Length = 336
Score = 53.2 bits (122), Expect = 3e-07
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Frame = +1
Query: 394 ISAKSFTCRELLVKNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH- 570
+SA++F ++ ++STG ++D +LGGG TG+I EIFGE GKTQL ++
Sbjct: 84 LSARTFY--QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTC 141
Query: 571 NLP--------KCSVYICTEDLFPAKRFNQIMNSIKSRDQDYGKNV 684
LP KC +YI TE+ F +R I K + + NV
Sbjct: 142 QLPISQKGGEGKC-MYIDTENTFRPERLAAIAQRYKLNESEVLDNV 186
>AY257540-1|AAP13056.1| 270|Drosophila melanogaster spindle D
protein.
Length = 270
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCS 588
KI TG +D GGG G + E+ G SG+GKTQ+ L ++ +PK +
Sbjct: 45 KILTGKKALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAA 94
>AY071162-1|AAL48784.1| 270|Drosophila melanogaster RE19845p
protein.
Length = 270
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCS 588
KI TG +D GGG G + E+ G SG+GKTQ+ L ++ +PK +
Sbjct: 45 KILTGKKALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAA 94
>AE014297-4083|AAN14399.1| 270|Drosophila melanogaster CG31069-PA
protein.
Length = 270
Score = 40.7 bits (91), Expect = 0.002
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLVLYTSIH-NLPKCS 588
KI TG +D GGG G + E+ G SG+GKTQ+ L ++ +PK +
Sbjct: 45 KILTGKKALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAA 94
>AY075521-1|AAL68329.1| 623|Drosophila melanogaster RE70153p
protein.
Length = 623
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
KN TG +I + + G FR G ++ I G SG+GK+ L+
Sbjct: 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLL 67
>AE014296-1994|AAF50035.2| 623|Drosophila melanogaster CG32091-PB
protein.
Length = 623
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 433 KNCKISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQLV 552
KN TG +I + + G FR G ++ I G SG+GK+ L+
Sbjct: 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLL 67
>AY069801-1|AAL39946.1| 766|Drosophila melanogaster SD03967p
protein.
Length = 766
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 478 LGGGFRTGTINEIFGESGSGKTQLV 552
L G FR+G + I G SG+GK+ L+
Sbjct: 134 LNGSFRSGELTAIMGPSGAGKSTLL 158
>AE014134-294|AAN10460.1| 766|Drosophila melanogaster CG17646-PB,
isoform B protein.
Length = 766
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 478 LGGGFRTGTINEIFGESGSGKTQLV 552
L G FR+G + I G SG+GK+ L+
Sbjct: 134 LNGSFRSGELTAIMGPSGAGKSTLL 158
>AE014134-293|AAF51341.3| 766|Drosophila melanogaster CG17646-PA,
isoform A protein.
Length = 766
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 478 LGGGFRTGTINEIFGESGSGKTQLV 552
L G FR+G + I G SG+GK+ L+
Sbjct: 134 LNGSFRSGELTAIMGPSGAGKSTLL 158
>AY075278-1|AAL68145.1| 204|Drosophila melanogaster AT30094p
protein.
Length = 204
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -3
Query: 443 LQFFTSNSRHVKLLALI*SDTIFFTNWMSLLCILVSLFISKID-NIIISLVLDIPALSI 270
L FF S H + L + +F +W++ + +L S + ++ N++ L+LD+ +++
Sbjct: 29 LSFFKSLRIHSRFLEISCDGIAWFVSWIAFIWLLSSKSLYQMQVNMLFGLILDVVIVAV 87
>AE014134-1795|AAN10729.1| 204|Drosophila melanogaster CG31717-PA
protein.
Length = 204
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -3
Query: 443 LQFFTSNSRHVKLLALI*SDTIFFTNWMSLLCILVSLFISKID-NIIISLVLDIPALSI 270
L FF S H + L + +F +W++ + +L S + ++ N++ L+LD+ +++
Sbjct: 29 LSFFKSLRIHSRFLEISCDGIAWFVSWIAFIWLLSSKSLYQMQVNMLFGLILDVVIVAV 87
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,695,481
Number of Sequences: 53049
Number of extensions: 559297
Number of successful extensions: 1246
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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