Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_J02
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    46   2e-05
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    46   2e-05
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    46   2e-05
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    46   2e-05
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    32   0.44 
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +1

Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQL 152


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +1

Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL
Sbjct: 155 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQL 190


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +1

Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQL 152


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +1

Query: 442 KISTGCSKIDDILGGGFRTGTINEIFGESGSGKTQL 549
           +I TG + +D +LGGG  TG+I E++GE  +GKTQL
Sbjct: 117 QIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQL 152


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = -3

Query: 377 FFTNWMSLLCILVSLFISKIDNIIISLVLDIPALSIASNKFNGKILFKYM 228
           FF   ++ + I+  L I     +++ L L +  +S ASNK++ ++LF++M
Sbjct: 89  FFMTIIACIGIVFMLVIILFIILVVELDLQVNTMSQASNKYHKRLLFEFM 138


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 550 LVEFFLNHFHQISH*LFPYETHHLIYHLF*NSPYLFYNF 434
           L  FFL H       +FP +  H +++ F  + Y+ YNF
Sbjct: 78  LSNFFLTHNEHNMEVIFPVKVFHFLHYYFAYAQYI-YNF 115


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 550 LVEFFLNHFHQISH*LFPYETHHLIYHLF*NSPYLFYNF 434
           L  FFL H       +FP +  H +++ F  + Y+ YNF
Sbjct: 78  LSNFFLTHNEHNMEVIFPVKVFHFLHYYFAYAQYI-YNF 115


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 129 GQFIMNI*RLIVSLSFIILRFVLIHIIPTL*KKHVF 236
           G+FI N    IVS+   +L F    I+PTL K+H++
Sbjct: 205 GKFIAN--HKIVSILVALLCFATAFILPTLHKEHLY 238


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 129 GQFIMNI*RLIVSLSFIILRFVLIHIIPTL*KKHVF 236
           G+FI N    IVS+   +L F    I+PTL K+H++
Sbjct: 205 GKFIAN--HKIVSILVALLCFATAFILPTLHKEHLY 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,792
Number of Sequences: 27780
Number of extensions: 309005
Number of successful extensions: 775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)