Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_I24
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 4e-35
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 79 4e-15
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52) 32 0.42
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 31 0.56
SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 27 9.1
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 144 bits (350), Expect = 4e-35
Identities = 68/93 (73%), Positives = 82/93 (88%), Gaps = 2/93 (2%)
Frame = +3
Query: 258 RYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETP 431
R YSS P+H KV LPALSPTME+G++VSWEK+EGD+L+EGDLL +IETDKATM FETP
Sbjct: 59 RLYSSDGYPTHTKVPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETP 118
Query: 432 EEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDV 530
EEG++AKILIPAG+K VP+GKLLCIIV ++ DV
Sbjct: 119 EEGFIAKILIPAGSKDVPIGKLLCIIVPNKEDV 151
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +3
Query: 318 MESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 473
ME+G+IVSW KKEGD + GD LCEIETDKAT+ +T E+G LAKI+IP GT
Sbjct: 1 METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGT 52
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +3
Query: 282 HIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 461
++ VN P + ++ G I W++ GD ++E +++ EIETDK ++ P G + ++ +
Sbjct: 47 YVVVNTPPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFV 105
Query: 462 PAGTK 476
G K
Sbjct: 106 ADGDK 110
>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
Length = 353
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 236 TTMDCSDEVLFESTITYKGQPSSSFANHG-EW 328
TTMDC D L ST+ Y G P S A+HG +W
Sbjct: 214 TTMDCHDFPL--STMAYHGLPYYSMASHGSQW 243
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 239 TMDCSDEVLFESTITYKGQPSSSFANHG 322
TMDC D L +T+ Y G P S A+HG
Sbjct: 321 TMDCHDLPL--TTMAYHGLPHYSMASHG 346
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 31.5 bits (68), Expect = 0.56
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 108 ILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQT 224
++ D L K + S I+ C E AKR + N+L E ++ T
Sbjct: 816 VIVDDLSKQLESYISNCAELEEAKRAMDNRLTEKVESLT 854
>SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 201 LEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 356
LE Q QT+L P W+ Q +Y L S + V P L P +S + +++++
Sbjct: 110 LESDQAQTILIVPNWSTQ-PWYPKL-SRLLVQKPILLPEKKSNIYLPFDQEK 159
>SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/78 (23%), Positives = 35/78 (44%)
Frame = +3
Query: 150 TRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESG 329
T C+ + L + T L + +++S+PQ + ++ H KV+ LS +
Sbjct: 13 TDCVESPLPGKSPTETLFSSSPFLSLMSSPQLKTKQHQFTMNKLHQKVSKLQLSLDAQMH 72
Query: 330 SIVSWEKKEGDKLSEGDL 383
+ E++ DK E D+
Sbjct: 73 MQATLEEELADKCKEIDV 90
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 294 NLPALSPTMESGSIVSWEKK 353
N P+LSPT ES + +W +K
Sbjct: 558 NTPSLSPTSESAMLQNWRQK 577
>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 324 SGSIVSWEKKEGDKLSEGDLLCEIETDK 407
+G ++ K GD ++EGD++ +IE K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553
>SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 342 WEKKEGDKLSEGDLLCEIETDKATMGFETPEE 437
W KEGD SE C IE D E P E
Sbjct: 32 WYGKEGDVASEEHEECLIEDDAIIYNHENPHE 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,024
Number of Sequences: 59808
Number of extensions: 364341
Number of successful extensions: 931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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